Evidence map›Paper›PMID 23489718›Full record

ArticleEnvironmental microbiology2013

A highly conserved mycobacterial cholesterol catabolic pathway.

Esther García-Fernández, Daniel J Frank, Beatriz Galán, Petrea M Kells, Larissa M Podust, José L García, Paul R Ortiz de Montellano

Open access · greenAbstract read
In one paragraph

Article in Environmental microbiology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 63 citations in OpenAlex.

  1. Article
  2. Article
  3. Structure-Function Analysis ofInternational journal of molecular sciences · 2025
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  14. Microenvironment ofBioMed research international · 2019
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Esther García-FernándezDepartment of Environmental Biology, Centro de Investigaciones Biológicas, CSIC, Madrid, Spain.
Daniel J Frank
Beatriz Galán
Petrea M Kells
Larissa M Podust
José L García
Paul R Ortiz de Montellano
Centro de Investigaciones Biológicas Margarita Salas · ESUniversity of California, San Francisco · USCenter for Discovery · US

Funding

Oxygen Sensors and P450 Monooxygenases in Mycobacertium tuberculosisR01AI074824 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ORTIZ DE MONTELLANO, PAUL R · 2007 to 2016
$4.3M
Structure and Engineering of Natural Product Cytochrome P450 EnzymesR01GM078553 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MONTGOMERY, JOHN, PODUST, LARISSA M. · 2007 to 2015
$2.9M
Structure-Aided Design of CYP51 Inhibitors for Treatment of Parasitic InfectionsR01AI095437 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI PODUST, LARISSA M. · 2011 to 2015
$2.2M
NIAID NIH HHS AI074824NIAID NIH HHS AI095437NIAID NIH HHS R01 AI074824NIAID NIH HHS R01 AI095437NIGMS NIH HHS GM078553NIGMS NIH HHS R01 GM078553
6 · The paper itself

Abstract

Degradation of the cholesterol side-chain in Mycobacterium tuberculosis is initiated by two cytochromes P450, CYP125A1 and CYP142A1, that sequentially oxidize C26 to the alcohol, aldehyde and acid metabolites. Here we report characterization of the homologous enzymes CYP125A3 and CYP142A2 from Mycobacterium smegmatis mc(2) 155. Heterologously expressed, purified CYP125A3 and CYP142A2 bound cholesterol, 4-cholesten-3-one, and antifungal azole drugs. CYP125A3 or CYP142A2 reconstituted with spinach ferredoxin and ferredoxin reductase efficiently hydroxylated 4-cholesten-3-one to the C-26 alcohol and subsequently to the acid. The X-ray structures of both substrate-free CYP125A3 and CYP142A2 and of cholest-4-en-3-one-bound CYP142A2 reveal significant differences in the substrate binding sites compared with the homologous M. tuberculosis proteins. Deletion only of cyp125A3 causes a reduction of both the alcohol and acid metabolites and a strong induction of cyp142 at the mRNA and protein levels, indicating that CYP142A2 serves as a functionally redundant back up enzyme for CYP125A3. In contrast to M. tuberculosis, the M. smegmatis Δcyp125Δcyp142 double mutant retains its ability to grow on cholesterol albeit with a diminished capacity, indicating an additional level of redundancy within its genome.

Indexed as

Antifungal AgentsAzolesBinding SitesCholestenonesCholesterolCrystallography, X-RayCytochrome P-450 Enzyme SystemGene DeletionGene Expression Regulation, BacterialHydroxylationModels, MolecularMycobacterium smegmatisMycobacterium tuberculosisOxidation-ReductionProtein Structure, TertiaryAntifungal AgentsAzolescholest-4-en-3-oneCholestenonesCholesterolCytochrome P-450 Enzyme System

Identifiers

PMID23489718
PMCPMC3706556
OpenAlexW1892329553

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.