Evidence map›Paper›PMID 23487766›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2013

Structure of the trypanosome cyanide-insensitive alternative oxidase.

Tomoo Shiba, Yasutoshi Kido, Kimitoshi Sakamoto, Daniel Ken Inaoka, Chiaki Tsuge, Ryoko Tatsumi, Gen Takahashi, Emmanuel Oluwadare Balogun, Takeshi Nara, Takashi Aoki and 8 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 77 papers.

0numbers the graph read from it
0cells of the map it votes in
77citing papers in PubMed
8.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

77 citing papers in PubMed, 180 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Review
  7. Ascofuranone antibiotic is a promising trypanocidal drug for nagana.The Onderstepoort journal of veterinary research · 2024
    Article
  8. Review
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
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  15. Article
  16. Review
  17. Article
  18. Recent Advances in Structural Studies of CytochromeInternational journal of molecular sciences · 2022
    Review
  19. Article
  20. Article

17 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 6 institutions in 3 countries.

Tomoo ShibaDepartment of Biomedical Chemistry, Graduate School of Medicine, The University of Tokyo, Tokyo 113-0033, Japan.
Yasutoshi Kido
Kimitoshi Sakamoto
Daniel Ken Inaoka
Chiaki Tsuge
Ryoko Tatsumi
Gen Takahashi
Emmanuel Oluwadare Balogun
Takeshi Nara
Takashi Aoki
Teruki Honma
Akiko Tanaka
Masayuki Inoue
Shigeru Matsuoka
Hiroyuki Saimoto
Anthony L Moore
Shigeharu Harada
Kiyoshi Kita
Kyoto Institute of Technology · JPThe University of Tokyo · JPJuntendo University · JPSystems Biology Institute · JPTottori University · JPUniversity of Sussex · GB

Funding

Biotechnology and Biological Sciences Research Council BB/E015328/1
6 · The paper itself

Abstract

In addition to haem copper oxidases, all higher plants, some algae, yeasts, molds, metazoans, and pathogenic microorganisms such as Trypanosoma brucei contain an additional terminal oxidase, the cyanide-insensitive alternative oxidase (AOX). AOX is a diiron carboxylate protein that catalyzes the four-electron reduction of dioxygen to water by ubiquinol. In T. brucei, a parasite that causes human African sleeping sickness, AOX plays a critical role in the survival of the parasite in its bloodstream form. Because AOX is absent from mammals, this protein represents a unique and promising therapeutic target. Despite its bioenergetic and medical importance, however, structural features of any AOX are yet to be elucidated. Here we report crystal structures of the trypanosomal alternative oxidase in the absence and presence of ascofuranone derivatives. All structures reveal that the oxidase is a homodimer with the nonhaem diiron carboxylate active site buried within a four-helix bundle. Unusually, the active site is ligated solely by four glutamate residues in its oxidized inhibitor-free state; however, inhibitor binding induces the ligation of a histidine residue. A highly conserved Tyr220 is within 4 Å of the active site and is critical for catalytic activity. All structures also reveal that there are two hydrophobic cavities per monomer. Both inhibitors bind to one cavity within 4 Å and 5 Å of the active site and Tyr220, respectively. A second cavity interacts with the inhibitor-binding cavity at the diiron center. We suggest that both cavities bind ubiquinol and along with Tyr220 are required for the catalytic cycle for O2 reduction.

Indexed as

Drug ResistanceAlternative OxidaseCatalytic DomainCrystallography, X-RayCyanidesHumansMitochondrial ProteinsOxidation-ReductionOxidoreductasesOxygenPlant ProteinsProtein Structure, SecondaryProtozoan ProteinsTrypanosoma brucei bruceiAlternative OxidaseCyanidesMitochondrial ProteinsOxidoreductasesOxygenPlant ProteinsProtozoan Proteins

Identifiers

PMID23487766
PMCPMC3607012
OpenAlexW2112335860

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.