Evidence map›Paper›PMID 23487186›Full record

ArticleDatabase : the journal of biological databases and curation2013

The new modern era of yeast genomics: community sequencing and the resulting annotation of multiple Saccharomyces cerevisiae strains at the Saccharomyces Genome Database.

Stacia R Engel, J Michael Cherry

Open access · goldAbstract read
In one paragraph

Article in Database : the journal of biological databases and curation, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
10.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 51 citations in OpenAlex.

  1. Article
  2. Article
  3. Fungal evolution: cellular, genomic and metabolic complexity.Biological reviews of the Cambridge Philosophical Society · 2020
    Article
  4. Article
  5. Article
  6. Review
  7. Whole Genome Sequencing,G3 (Bethesda, Md.) · 2018
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Accurate Recovery of Ribosome Positions Reveals Slow Translation of Wobble-Pairing Codons in Yeast.Journal of computational biology : a journal of computational molecular cell biology · 2017
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. From one to many: expanding the Saccharomyces cerevisiae reference genome panel.Database : the journal of biological databases and curation · 2016
    Article
  18. The Candida pathogenic species complex.Cold Spring Harbor perspectives in medicine · 2014
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Stacia R EngelDepartment of Genetics, Stanford University, Stanford, CA, USA.
J Michael Cherry
Stanford University · US

Funding

Genomic Resource for the Yeast SaccharomycesU41HG001315 · NHGRI · STANFORD UNIVERSITY · PI CHERRY, J. MICHAEL · 2011 to 2020
$26.4M
NHGRI NIH HHS 5U41HG001315-18NHGRI NIH HHS U41 HG001315
6 · The paper itself

Abstract

The first completed eukaryotic genome sequence was that of the yeast Saccharomyces cerevisiae, and the Saccharomyces Genome Database (SGD; http://www.yeastgenome.org/) is the original model organism database. SGD remains the authoritative community resource for the S. cerevisiae reference genome sequence and its annotation, and continues to provide comprehensive biological information correlated with S. cerevisiae genes and their products. A diverse set of yeast strains have been sequenced to explore commercial and laboratory applications, and a brief history of those strains is provided. The publication of these new genomes has motivated the creation of new tools, and SGD will annotate and provide comparative analyses of these sequences, correlating changes with variations in strain phenotypes and protein function. We are entering a new era at SGD, as we incorporate these new sequences and make them accessible to the scientific community, all in an effort to continue in our mission of educating researchers and facilitating discovery.

Indexed as

Databases, GeneticGenome, FungalGenomicsMolecular Sequence AnnotationAmino Acid SequenceBase SequenceMolecular Sequence DataOpen Reading FramesPhylogenySaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSequence AlignmentSequence Analysis, DNASaccharomyces cerevisiae Proteins

Identifiers

PMID23487186
PMCPMC3595989
OpenAlexW1981844167

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.