Evidence map›Paper›PMID 23484044›Full record

ArticlePloS one2013

A segment of 97 amino acids within the translocation domain of Clostridium difficile toxin B is essential for toxicity.

Yongrong Zhang, Lianfa Shi, Shan Li, Zhiyong Yang, Clive Standley, Zhong Yang, Ronghua ZhuGe, Tor Savidge, Xiaoning Wang, Hanping Feng

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Article
  3. Mouse monoclonal antibodies againstInfection and immunity · 2025
    Article
  4. Article
  5. Article
  6. Article
  7. Structure of the full-length Clostridium difficile toxin B.Nature structural & molecular biology · 2019
    Article
  8. Cell-penetrating peptides derived fromThe Journal of biological chemistry · 2018
    Article
  9. Article
  10. Article
  11. Novel Chimeric Protein Vaccines AgainstFrontiers in immunology · 2018
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Translocation domain mutations affecting cellular toxicity identify the Clostridium difficile toxin B pore.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Yongrong ZhangSchool of Bioengineering, East China University of Science and Technology, Shanghai, China.
Lianfa Shi
Shan Li
Zhiyong Yang
Clive Standley
Zhong Yang
Ronghua ZhuGe
Tor Savidge
Xiaoning Wang
Hanping Feng
East China University of Science and Technology · CNUniversity of Maryland, Baltimore · USUniversity of Massachusetts Chan Medical School · USBaylor College of Medicine · US

Funding

UTMB Clinical and Translational Science AwardUL1TR000071 · NCATS · UNIVERSITY OF TEXAS MED BR GALVESTON · PI BRASIER, ALLAN R. · 2012 to 2014
$14.4M
Development of Vaccines against Clostridium difficile InfectionR01AI088748 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI FENG, HANPING, TZIPORI, SAUL R · 2010 to 2014
$3.1M
Allosteric therapy of the Clostridium difficile toxinsR01AI100914 · NIAID · UNIVERSITY OF TEXAS MED BR GALVESTON · PI SAVIDGE, TOR C. · 2012 to 2016
$1.9M
Epithelium, dendritic cells, and Clostridium difficile associated colitisR01DK084509 · NIDDK · UNIVERSITY OF MARYLAND BALTIMORE · PI FENG, HANPING · 2010 to 2014
$1.7M
NCATS NIH HHS UL1 TR000071NCATS NIH HHS UL1TR000071NIAID NIH HHS R01 AI088748NIAID NIH HHS R01AI088748NIAID NIH HHS R01 AI100914NIAID NIH HHS R01AI10094001NIDDK NIH HHS R01 DK084509NIDDK NIH HHS R01DK084509
6 · The paper itself

Abstract

Clostridium difficile toxin B (TcdB) intoxicates target cells by glucosylating Rho GTPases. TcdB (269 kDa) consists of at least 4 functional domains including a glucosyltransferase domain (GTD), a cysteine protease domain (CPD), a translocation domain (TD), and a receptor binding domain (RBD). The function and molecular mode of action of the TD, which is the largest segment of TcdB and comprises nearly 50% of the protein, remain largely unknown. Here we show that a 97-amino-acid segment (AA1756 - 1852, designated as ?97 or D97), located in the C-terminus of the TD and adjacent to the RBD, is essential for the cellular activity of TcdB. Deletion of this segment in TcdB (designated as TxB-D97), did not adversely alter toxin enzymatic activities or its cellular binding and uptake capacity. TxB-D97 bound to and entered cells in a manner similar to TcdB holotoxin. Both wild type and mutant toxins released their GTDs similarly in the presence of inositol hexakisphosphate (InsP6), and showed a similar glucosyltransferase activity in a cell-free glucosylating assay. Despite these similarities, the cytotoxic activity of TxB-D97 was reduced by more than 5 logs compared to wild type toxin, supported by the inability of TxB-D97 to glucosylate Rac1 of target cells. Moreover, the mutant toxin failed to elicit tumor necrosis factor alpha (TNF-α) in macrophages, a process dependent on the glucosyltransferase activity of the toxin. Cellular fractionation of toxin-exposed cells revealed that TxB-D97 was unable to efficiently release the GTD into cytosol. Thereby, we conclude the 97-amino-acid region of the TD C-terminus of TcdB adjacent to the RBD, is essential for the toxicity of TcdB.

Indexed as

Amino Acid SequenceAnimalsBacterial ProteinsBacterial ToxinsBiological AssayCell FractionationCysteine ProteasesDNA PrimersFluorescenceGlucosyltransferasesImmunoprecipitationKaplan-Meier EstimateMicePolymerase Chain ReactionProtein Structure, TertiaryTetrazolium SaltsBacterial ProteinsBacterial ToxinsCysteine ProteasesDNA PrimersGlucosyltransferasesTetrazolium SaltsThiazolesthiazolyl bluetoxB protein, Clostridium difficile

Identifiers

PMID23484044
PMCPMC3590123
OpenAlexW2051247763

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.