ArticleNature communications2013
Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying Oryza genome evolution.
Article in Nature communications, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 100 papers.
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100 citing papers in PubMed.
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- Whole Genome Sequencing of the Moruga Hill Rice (Biotech (Basel (Switzerland)) · 2026Article
- Morphology of Chinese Chive and Onion (Plants (Basel, Switzerland) · 2026Article
- A robust 1K-core marker set for wild germplasm management and targeted pre-breeding of rice: development and applications.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- Epigenetic Regulation of Salt Stress Responses in Rice: Mechanisms and Prospects for Enhancing Tolerance.Epigenomes · 2025Review
- Genome Architecture and Speciation in Plants and Animals.Molecular ecology · 2025Review
- Genome-Wide Analyses of Phosphate Transporters in Wild Rice (Food science & nutrition · 2025Article
- Chromosome Ordinal Number-Related Genomic Stability Revealed AmongInternational journal of molecular sciences · 2025Article
- Chromosome-level genome assembly of Jiaobai (Zizania latifolia, Poceace).Scientific data · 2025Article
- Evolution and diversification of the momilactone biosynthetic gene cluster in the genus Oryza.The New phytologist · 2025Article
- The genomes of the most diverse AA genome rice species provide a resource for rice improvement and studies of rice evolution and domestication.BMC genomics · 2025Article
- OsCYP706C2 diverts rice strigolactone biosynthesis to a noncanonical pathway branch.Science advances · 2024Article
- Chromosome-level genome assembly and annotation of Flueggea virosa (Phyllanthaceae).Scientific data · 2024Article
- Machine learning empowered next generation DNA sequencing: perspective and prospectus.Chemical science · 2024Review
- Phylogenomic profiles of whole-genome duplications in Poaceae and landscape of differential duplicate retention and losses among major Poaceae lineages.Nature communications · 2024Article
- Unravelling inversions: Technological advances, challenges, and potential impact on crop breeding.Plant biotechnology journal · 2024Review
- Genomic analysis and characterization of new loci associated with seed protein and oil content in soybeans.The plant genome · 2023Article
- The Ga1 locus of the genus Zea is associated with novel genome structures derived from multiple, independent nonhomologous recombination events.G3 (Bethesda, Md.) · 2023Article
- A high-quality chromosome-level wild rice genome of Oryza coarctata.Scientific data · 2023Article
40 more citing papers are in PubMed but not listed here.
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41 authors.
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Abstract
The wild species of the genus Oryza contain a largely untapped reservoir of agronomically important genes for rice improvement. Here we report the 261-Mb de novo assembled genome sequence of Oryza brachyantha. Low activity of long-terminal repeat retrotransposons and massive internal deletions of ancient long-terminal repeat elements lead to the compact genome of Oryza brachyantha. We model 32,038 protein-coding genes in the Oryza brachyantha genome, of which only 70% are located in collinear positions in comparison with the rice genome. Analysing breakpoints of non-collinear genes suggests that double-strand break repair through non-homologous end joining has an important role in gene movement and erosion of collinearity in the Oryza genomes. Transition of euchromatin to heterochromatin in the rice genome is accompanied by segmental and tandem duplications, further expanded by transposable element insertions. The high-quality reference genome sequence of Oryza brachyantha provides an important resource for functional and evolutionary studies in the genus Oryza.
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