Evidence map›Paper›PMID 23479755›Full record

ArticlePhilosophical transactions of the Royal Society of London. Series B, Biological sciences2013

Identification of a reductive tetrachloroethene dehalogenase in Shewanella sediminis.

Svenja T Lohner, Alfred M Spormann

Open access · bronzeAbstract read
In one paragraph

Article in Philosophical transactions of the Royal Society of London. Series B, Biological sciences, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.3field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 40 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Biological synthesis of iron nanoparticles using hydrolysates from a waste-based biorefinery.Environmental science and pollution research international · 2020
    Article
  6. Review
  7. Microbial degradation of chloroethenes: a review.Environmental science and pollution research international · 2017
    Review
  8. Article
  9. Article
  10. Article
  11. Organohalide respiration: microbes breathing chlorinated molecules.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2013
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Svenja T LohnerCivil and Environmental Engineering, Stanford University, Stanford, CA 94305, USA.
Alfred M Spormann
Stanford University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The genome sequence of psychrophilic Shewanella sediminis revealed the presence of five putative reductive dehalogenases (Rdhs). We found that cell extracts of pyruvate/fumarate-grown S. sediminis cells catalysed reduced methyl viologen-dependent reductive dechlorination of tetrachloroethene (PCE) to trichloroethene (TCE) at a specific activity of approximately 1 nmol TCE min(-1) (mg protein)(-1). Dechlorination of PCE followed Michaelis-Menten kinetics with an apparent Km of 120 μM PCE. No PCE dechlorination was observed with heat-denatured extract or when cyanocobalamin was omitted from the growth medium; however, the presence of PCE in the growth medium increased PCE transformation rates. Analysis of mutants carrying in-frame deletions of all five Rdhs encoding genes showed that only deletion of Ssed_3769 resulted in the loss of PCE dechlorination activity suggesting that Ssed_3769 is a functional Rdh. This is the first study to show reductive dechlorination activity of PCE in a sediment-dwelling Shewanella species that may be important for linking the flux of organohalogens to organic carbon via reductive dehalogenation in marine sediments.

Indexed as

Gene Expression Regulation, BacterialGenes, BacterialAmino Acid SequenceBacterial ProteinsCulture MediaEthaneEvolution, MolecularHalogenationHydrocarbons, ChlorinatedMolecular Sequence DataOxidoreductasesParaquatPhylogenySequence AlignmentShewanellaSpecies SpecificityBacterial ProteinsCulture MediaEthaneHydrocarbons, ChlorinatedOxidoreductasesParaquattetrachloroethanetetrachloroethene dehalogenaseTrichloroethylene

Identifiers

PMID23479755
PMCPMC3638466
OpenAlexW2132838743

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.