Evidence map›Paper›PMID 23479620›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2013

Phase geometries of two-dimensional excitable waves govern self-organized morphodynamics of amoeboid cells.

Daisuke Taniguchi, Shuji Ishihara, Takehiko Oonuki, Mai Honda-Kitahara, Kunihiko Kaneko, Satoshi Sawai

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 66 papers.

0numbers the graph read from it
0cells of the map it votes in
66citing papers in PubMed
7.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

66 citing papers in PubMed, 135 citations in OpenAlex.

  1. Article
  2. Single-cell chiral symmetry breaking under confinement.bioRxiv : the preprint server for biology · 2026
    Article
  3. Article
  4. Signaling and actin waves at a glance.Journal of cell science · 2025
    Review
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  7. Article
  8. Nonlinear dynamics in phosphoinositide metabolism.Current opinion in cell biology · 2024
    Review
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Mechanochemical subcellular-element model of crawling cells.Frontiers in cell and developmental biology · 2022
    Article
  18. Article
  19. Microtopographical guidance of macropinocytic signaling patches.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  20. Article

6 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Daisuke TaniguchiGraduate School of Arts and Sciences, University of Tokyo, Meguro-ku, Tokyo 153-8902, Japan.
Shuji Ishihara
Takehiko Oonuki
Mai Honda-Kitahara
Kunihiko Kaneko
Satoshi Sawai
Systems Biology Institute · JPThe University of Tokyo · JPTokyo University of the Arts · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In both randomly moving Dictyostelium and mammalian cells, phosphatidylinositol (3,4,5)-trisphosphate and F-actin are known to propagate as waves at the membrane and act to push out the protruding edge. To date, however, the relationship between the wave geometry and the patterns of amoeboid shape change remains elusive. Here, by using phase map analysis, we show that morphology dynamics of randomly moving Dictyostelium discoideum cells can be characterized by the number, topology, and position of spatial phase singularities, i.e., points that represent organizing centers of rotating waves. A single isolated singularity near the cellular edge induced a rotational protrusion, whereas a pair of singularities supported a symmetric extension. These singularities appeared by strong phase resetting due to de novo nucleation at the back of preexisting waves. Analysis of a theoretical model indicated excitability of the system that is governed by positive feedback from phosphatidylinositol (3,4,5)-trisphosphate to PI3-kinase activation, and we showed experimentally that this requires F-actin. Furthermore, by incorporating membrane deformation into the model, we demonstrated that geometries of competing waves explain most of the observed semiperiodic changes in amoeboid morphology.

Indexed as

Models, BiologicalAnimalsCell MembraneDictyosteliumEnzyme ActivationPhosphatidylinositol 3-KinasesProtozoan ProteinsPhosphatidylinositol 3-KinasesProtozoan Proteins

Identifiers

PMID23479620
PMCPMC3612638
OpenAlexW1972669224

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.