Evidence map›Paper›PMID 23478590›Full record

ArticleScientific reports2013

Loss of the six3/6 controlling pathways might have resulted in pinhole-eye evolution in Nautilus.

Atsushi Ogura, Masa-aki Yoshida, Takeya Moritaki, Yuki Okuda, Jun Sese, Kentaro K Shimizu, Konstantinos Sousounis, Panagiotis A Tsonis

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
6.0field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it, 32 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Review
  11. Article
  12. Article
  13. Eye Development inFrontiers in physiology · 2017
    Article
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 3 countries.

Atsushi OguraOchadai Academic Production, Ochanomizu University, Tokyo, 112-8610, Japan. aogu@whelix.info
Masa-aki Yoshida
Takeya Moritaki
Yuki Okuda
Jun Sese
Kentaro K Shimizu
Konstantinos Sousounis
Panagiotis A Tsonis
Ochanomizu University · JPTokyo Institute of Technology · JPUniversity of Dayton · USEnoshima Aquarium · JPUniversity of Zurich · CH

Funding

GENE REGULATION IN LENS REGENERATIONR01EY010540 · NEI · UNIVERSITY OF DAYTON · PI TSONIS, PANAGIOTIS A · 1995 to 2013
$3.3M
NEI NIH HHS EY10540NEI NIH HHS R01 EY010540
6 · The paper itself

Abstract

Coleoid cephalopods have an elaborate camera eye whereas nautiloids have primitive pinhole eye without lens and cornea. The Nautilus pinhole eye provides a unique example to explore the module of lens formation and its evolutionary mechanism. Here, we conducted an RNA-seq study of developing eyes of Nautilus and pygmy squid. First, we found that evolutionary distances from the common ancestor to Nautilus or squid are almost the same. Although most upstream eye development controlling genes were expressed in both species, six3/6 that are required for lens formation in vertebrates was not expressed in Nautilus. Furthermore, many downstream target genes of six3/6 including crystallin genes and other lens protein related genes were not expressed in Nautilus. As six3/6 and its controlling pathways are widely conserved among molluscs other than Nautilus, the present data suggest that deregulation of the six3/6 pathway led to the pinhole eye evolution in Nautilus.

Indexed as

Biological EvolutionAmino Acid SequenceAnimalsBase SequenceCrystallinsDecapodiformesEyeEye ProteinsGene Expression Regulation, DevelopmentalGene Regulatory NetworksHomeobox Protein SIX3Homeodomain ProteinsLens, CrystallineNautilusNerve Tissue ProteinsPhylogenyCrystallinsEye ProteinsHomeobox Protein SIX3Homeodomain ProteinsNerve Tissue Proteins

Identifiers

PMID23478590
PMCPMC3594755
OpenAlexW1998706392

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.