Evidence map›Paper›PMID 23477842›Full record

ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2013

Two types of alpha satellite DNA in distinct chromosomal locations in Azara's owl monkey.

Ornjira Prakhongcheep, Yuriko Hirai, Toru Hara, Kornsorn Srikulnath, Hirohisa Hirai, Akihiko Koga

Open access · goldAbstract read
In one paragraph

Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 26 citations in OpenAlex.

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  8. A centromere satellite concomitant with extensive karyotypic diversity across the Peromyscus genus defies predictions of molecular drive.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2019
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  16. Evolutionary origin of higher-order repeat structure in alpha-satellite DNA of primate centromeres.DNA research : an international journal for rapid publication of reports on genes and genomes · 2014
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  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Ornjira PrakhongcheepPrimate Research Institute, Kyoto University, Inuyama City 484-8506, Japan.
Yuriko Hirai
Toru Hara
Kornsorn Srikulnath
Hirohisa Hirai
Akihiko Koga
Kyoto University · JPKasetsart University · TH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Alpha satellite DNA is a repetitive sequence known to be a major DNA component of centromeres in primates (order Primates). New World monkeys form one major taxon (parvorder Platyrrhini) of primates, and their alpha satellite DNA is known to comprise repeat units of around 340 bp. In one species (Azara's owl monkey Aotus azarae) of this taxon, we identified two types of alpha satellite DNA consisting of 185- and 344-bp repeat units that we designated as OwlAlp1 and OwlAlp2, respectively. OwlAlp2 exhibits similarity throughout its entire sequence to the alpha satellite DNA of other New World monkeys. The chromosomal locations of the two types of sequence are markedly distinct: OwlAlp1 was observed at the centromeric constrictions, whereas OwlAlp2 was found in the pericentric regions. From these results, we inferred that OwlAlp1 was derived from OwlAlp2 and rapidly replaced OwlAlp2 as the principal alpha satellite DNA on a short time scale at the speciation level. A less likely alternative explanation is also discussed.

Indexed as

DNA, SatelliteAnimalsAotidaeCentromereChromosomesGenetic SpeciationTandem Repeat SequencesDNA, Satellitecentromerecentromeric constrictionreplacementsatellite DNAtandem repeats

Identifiers

PMID23477842
PMCPMC3686428
OpenAlexW2146802834

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.