Evidence map›Paper›PMID 23476017›Full record

ArticleThe Journal of biological chemistry2013

Biochemical and biophysical properties of a putative hub protein expressed by vaccinia virus.

Nicole E Kay, Travis W Bainbridge, Richard C Condit, Michael R Bubb, Reuben E Judd, Balasubramanian Venkatakrishnan, Robert McKenna, Susan M D'Costa

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.5field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Evolutionarily conserved grammar rules viral factories of amoeba-infecting members of the hyperdiverseProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Nicole E KayDepartment of Molecular Genetics and Microbiology, University of Florida, Gainesville, Florida 32610-0266, USA.
Travis W Bainbridge
Richard C Condit
Michael R Bubb
Reuben E Judd
Balasubramanian Venkatakrishnan
Robert McKenna
Susan M D'Costa
University of Florida · US

Funding

PHS HHS R01 18094
6 · The paper itself

Abstract

H5 is a constitutively expressed, phosphorylated vaccinia virus protein that has been implicated in viral DNA replication, post-replicative gene expression, and virus assembly. For the purpose of understanding the role of H5 in vaccinia biology, we have characterized its biochemical and biophysical properties. Previously, we have demonstrated that H5 is associated with an endoribonucleolytic activity. In this study, we have shown that this cleavage results in a 3'-OH end suitable for polyadenylation of the nascent transcript, corroborating a role for H5 in vaccinia transcription termination. Furthermore, we have shown that H5 is intrinsically disordered, with an elongated rod-shaped structure that preferentially binds double-stranded nucleic acids in a sequence nonspecific manner. The dynamic phosphorylation status of H5 influences this structure and has implications for the role of H5 in multiple processes during virus replication.

Indexed as

DNA ReplicationDNA, ViralEndoribonucleasesHeLa CellsHumansPhosphorylationProtein Structure, TertiaryTranscription Termination, GeneticVacciniaVaccinia virusViral ProteinsVirus ReplicationDNA, ViralEndoribonucleasesViral Proteins

Identifiers

PMID23476017
PMCPMC3630899
OpenAlexW2087413282

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.