Evidence map›Paper›PMID 23475965›Full record

ArticleJournal of bacteriology2013

The vitamin B₆ biosynthesis pathway in Streptococcus pneumoniae is controlled by pyridoxal 5'-phosphate and the transcription factor PdxR and has an impact on ear infection.

Samir El Qaidi, Jun Yang, Jing-Ren Zhang, Dennis W Metzger, Guangchun Bai

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 64 citations in OpenAlex.

  1. Article
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  4. Revealing fitness and virulence determinants of hypervirulentFrontiers in cellular and infection microbiology · 2025
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  10. Pyridoxine biosynthesis protein MoPdx1 affects the development and pathogenicity ofFrontiers in cellular and infection microbiology · 2023
    Article
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  13. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Samir El QaidiCenter for Immunology and Microbial Disease, Albany Medical College, Albany, New York, USA.
Jun Yang
Jing-Ren Zhang
Dennis W Metzger
Guangchun Bai
Albany Medical Center Hospital · US

Funding

Otitis Media-associated pneumococcal genesR01DC006917 · NIDCD · ALBANY MEDICAL COLLEGE · PI METZGER, DENNIS W, YAN, HONGGAO · 2004 to 2014
$4.1M
NIDCD NIH HHS DC006917NIDCD NIH HHS R01 DC006917
6 · The paper itself

Abstract

Vitamin B₆ is an essential cofactor for a large number of enzymes in both prokaryotes and eukaryotes. In this study, we characterized the pyridoxal 5'-phosphate (PLP) biosynthesis pathway in Streptococcus pneumoniae. Our results revealed that S. pneumoniae possesses a de novo vitamin B₆ biosynthesis pathway encoded by the pdxST genes. Purified PdxS functionally displayed as PLP synthase, whereas PdxT exhibited glutaminase activity in vitro. Deletion of pdxS, but not pdxT, resulted in a vitamin B₆ auxotrophic mutant. The defective growth of the ΔpdxS mutant in a vitamin B₆-depleted medium could be chemically restored in the presence of the B₆ vitamers at optimal concentrations. By analyzing PdxS expression levels, we demonstrated that the expression of pdxS was repressed by PLP and activated by a transcription factor, PdxR. A pneumococcal ΔpdxR mutant also exhibited as a vitamin B₆ auxotroph. In addition, we found that disruption of the vitamin B₆ biosynthesis pathway in S. pneumoniae caused a significant attenuation in a chinchilla middle ear infection model and a minor attenuation in a mouse pneumonia model, indicating that the impact of vitamin B₆ synthesis on virulence depends upon the bacterial infection niche.

Indexed as

AnimalsBacterial ProteinsBlotting, NorthernBlotting, WesternElectrophoretic Mobility Shift AssayFemaleMiceMice, Inbred BALB CPneumococcal InfectionsPyridoxal PhosphateStreptococcus pneumoniaeTranscription FactorsVitamin B 6Bacterial ProteinsPyridoxal PhosphateTranscription FactorsVitamin B 6

Identifiers

PMID23475965
PMCPMC3650526
OpenAlexW2168909138

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.