Evidence map›Paper›PMID 23474169›Full record

ArticleACS chemical biology2013

Discovery of the antibiotic phosacetamycin via a new mass spectrometry-based method for phosphonic acid detection.

Bradley S Evans, Changming Zhao, Jiangtao Gao, Courtney M Evans, Kou-San Ju, James R Doroghazi, Wilfred A van der Donk, Neil L Kelleher, William W Metcalf

Open access · greenAbstract readLetter
In one paragraph

Article in ACS chemical biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
3.2field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 39 citations in OpenAlex.

  1. Review
  2. Phosphonates ofInternational journal of molecular sciences · 2024
    Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. Discovery of phosphonic acid natural products by mining the genomes of 10,000 actinomycetes.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  10. Article
  11. Metagenomic small molecule discovery methods.Current opinion in microbiology · 2014
    Article
  12. Article
  13. Article
  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 3 countries.

Bradley S Evans
Changming Zhao
Jiangtao Gao
Courtney M Evans
Kou-San Ju
James R Doroghazi
Wilfred A van der Donk
Neil L Kelleher
William W Metcalf
University of Illinois Urbana-Champaign · USCenter for Genomic Science · ITIllinois College · USNorthwestern University · US

Funding

Structural Elucidation and Biosynthesis P01GM077596 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI METCALF, WILLIAM W · 2007 to 2016
$15.3M
Request for a Varian 600 MHz NMR InstrumentS10RR028833 · NCRR · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI VAN DER DONK, WILFRED A. · 2011 to 2011
$600k
Howard Hughes Medical InstituteNCRR NIH HHS S10 RR028833NIGMS NIH HHS GM P01 077596NIGMS NIH HHS P01 GM077596
6 · The paper itself

Abstract

Naturally occurring phosphonates such as phosphinothricin (Glufosinate, a commercially used herbicide) and fosfomycin (Monurol, a clinically used antibiotic) have proved to be potent and useful biocides. Yet this class of natural products is still an under explored family of secondary metabolites. Discovery of the biosynthetic pathways responsible for the production of these compounds has been simplified by using gene based screening approaches, but detection and identification of the natural products the genes produce have been hampered by a lack of high-throughput methods for screening potential producers under various culture conditions. Here, we present an efficient mass-spectrometric method for the selective detection of natural products containing phosphonate and phosphinate functional groups. We have used this method to identify a new phosphonate metabolite, phosacetamycin, whose structure, biological activity, and biosynthetic gene cluster are reported.

Indexed as

AcetamidesAnti-Bacterial AgentsBiosynthetic PathwaysChromatography, AffinityDrug Evaluation, PreclinicalEscherichia coliGenome, BacterialMagnetic Resonance SpectroscopyMass SpectrometryMicrobial Sensitivity TestsMolecular Sequence DataMolecular StructureMultigene FamilyPhosphatesPhosphorous AcidsStreptomycesAcetamidesAnti-Bacterial AgentsphosacetamycinPhosphatesphosphonic acidPhosphorous Acids

Identifiers

PMID23474169
PMCPMC3657337
OpenAlexW2091053734

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.