Evidence map›Paper›PMID 23472758›Full record

ArticleAmerican journal of human genetics2013

A CpG mutational hotspot in a ONECUT binding site accounts for the prevalent variant of hemophilia B Leyden.

Alister P W Funnell, Michael D Wilson, Benoit Ballester, Ka Sin Mak, Jon Burdach, Natisha Magan, Richard C M Pearson, Frederic P Lemaigre, Kathryn M Stowell, Duncan T Odom and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 30 citations in OpenAlex.

  1. Identification of NovelJournal of blood medicine · 2025
    Article
  2. The Molecular Basis of FIX Deficiency in Hemophilia B.International journal of molecular sciences · 2022
    Review
  3. Technologies for profiling the impact of genomic variants on transcription factor binding.Medizinische Genetik : Mitteilungsblatt des Berufsverbandes Medizinische Genetik e.V · 2021
    Article
  4. Article
  5. Article
  6. First case report of hemophilia B Leyden in Japan.International journal of hematology · 2017
    Article
  7. Article
  8. Hemophilia B: molecular pathogenesis and mutation analysis.Journal of thrombosis and haemostasis : JTH · 2015
    Review
  9. MACE: model based analysis of ChIP-exo.Nucleic acids research · 2014
    Article
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 4 countries.

Alister P W FunnellSchool of Biotechnology and Biomolecular Sciences, University of New South Wales, Kensington, NSW 2052, Australia.
Michael D Wilson
Benoit Ballester
Ka Sin Mak
Jon Burdach
Natisha Magan
Richard C M Pearson
Frederic P Lemaigre
Kathryn M Stowell
Duncan T Odom
Paul Flicek
Merlin Crossley
UNSW Sydney · AUMassey University · NZWellcome Trust · GBCancer Research UK · GBUCLouvain · BEUniversity of Cambridge · GB

Funding

Cancer Research UK 15603Cancer Research UK A15603European Research Council 202218Wellcome Trust 095908
6 · The paper itself

Abstract

Hemophilia B, or the "royal disease," arises from mutations in coagulation factor IX (F9). Mutations within the F9 promoter are associated with a remarkable hemophilia B subtype, termed hemophilia B Leyden, in which symptoms ameliorate after puberty. Mutations at the -5/-6 site (nucleotides -5 and -6 relative to the transcription start site, designated +1) account for the majority of Leyden cases and have been postulated to disrupt the binding of a transcriptional activator, the identity of which has remained elusive for more than 20 years. Here, we show that ONECUT transcription factors (ONECUT1 and ONECUT2) bind to the -5/-6 site. The various hemophilia B Leyden mutations that have been reported in this site inhibit ONECUT binding to varying degrees, which correlate well with their associated clinical severities. In addition, expression of F9 is crucially dependent on ONECUT factors in vivo, and as such, mice deficient in ONECUT1, ONECUT2, or both exhibit depleted levels of F9. Taken together, our findings establish ONECUT transcription factors as the missing hemophilia B Leyden regulators that operate through the -5/-6 site.

Indexed as

MutationAnimalsBinding SitesCell Line, TumorDNA-Binding ProteinsFactor IXGenetic Predisposition to DiseaseHemophilia BHepatocyte Nuclear Factor 6Hep G2 CellsHomeodomain ProteinsHumansLiverMaleMiceMice, KnockoutDNA-Binding ProteinsFactor IXHepatocyte Nuclear Factor 6Homeodomain ProteinsOnecut1 protein, mouseONECUT2 protein, mouseTranscription Factors

Identifiers

PMID23472758
PMCPMC3591849
OpenAlexW2021097332

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.