Evidence map›Paper›PMID 23471913›Full record

ArticleDisease models & mechanisms2013

Functional analysis of a zebrafish myd88 mutant identifies key transcriptional components of the innate immune system.

Michiel van der Vaart, Joost J van Soest, Herman P Spaink, Annemarie H Meijer

Open access · goldAbstract read
In one paragraph

Article in Disease models & mechanisms, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 83 papers.

0numbers the graph read from it
0cells of the map it votes in
83citing papers in PubMed
7.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

83 citing papers in PubMed, 140 citations in OpenAlex.

  1. A teleost-specific oxygen-immunity axis where FIH activates NF-κB via competitive IκBα binding.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  8. Frontiers in tuberculosis · 2025
    Review
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  11. Review
  12. Zebrafish (International journal of molecular sciences · 2024
    Review
  13. Article
  14. Article
  15. International journal of molecular sciences · 2024
    Article
  16. Article
  17. Review
  18. Article
  19. One Host-Multiple Applications: Zebrafish (International journal of molecular sciences · 2022
    Review
  20. Article

23 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Michiel van der VaartInstitute of Biology, Leiden University, Einsteinweg 55, 2333 CC, Leiden, The Netherlands.
Joost J van Soest
Herman P Spaink
Annemarie H Meijer
Leiden University · NL

Funding

Wellcome TrustWellcome Trust WT 077047/Z/05/Z
6 · The paper itself

Abstract

Toll-like receptors (TLRs) are an important class of pattern recognition receptors (PRRs) that recognize microbial and danger signals. Their downstream signaling upon ligand binding is vital for initiation of the innate immune response. In human and mammalian models, myeloid differentiation factor 88 (MYD88) is known for its central role as an adaptor molecule in interleukin 1 receptor (IL-1R) and TLR signaling. The zebrafish is increasingly used as a complementary model system for disease research and drug screening. Here, we describe a zebrafish line with a truncated version of MyD88 as the first zebrafish mutant for a TLR signaling component. We show that this immune-compromised mutant has a lower survival rate under standard rearing conditions and is more susceptible to challenge with the acute bacterial pathogens Edwardsiella tarda and Salmonella typhimurium. Microarray and quantitative PCR analysis revealed that expression of genes for transcription factors central to innate immunity (including NF-ĸB and AP-1) and the pro-inflammatory cytokine Il1b, is dependent on MyD88 signaling during these bacterial infections. Nevertheless, expression of immune genes independent of MyD88 in the myd88 mutant line was sufficient to limit growth of an attenuated S. typhimurium strain. In the case of infection with the chronic bacterial pathogen Mycobacterium marinum, we show that MyD88 signaling has an important protective role during early pathogenesis. During mycobacterial infection, the myd88 mutant shows accelerated formation of granuloma-like aggregates and increased bacterial burden, with associated lower induction of genes central to innate immunity. This zebrafish myd88 mutant will be a valuable tool for further study of the role of IL1R and TLR signaling in the innate immunity processes underlying infectious diseases, inflammatory disorders and cancer.

Indexed as

Transcription, GeneticAmino Acid SequenceAnimalsBacterial InfectionsBase SequenceDisease SusceptibilityEdwardsiella tardaEmbryo, NonmammalianFlagellinGene Expression RegulationHomozygoteHumansImmunity, InnateLeukocytesLipopolysaccharidesMolecular Sequence DataFlagellinLipopolysaccharidesMyeloid Differentiation Factor 88Poly I-CZebrafish Proteins

Identifiers

PMID23471913
PMCPMC3634667
OpenAlexW2153559789

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.