Evidence map›Paper›PMID 23471132›Full record

ArticlePlant physiology2013

Serine acts as a metabolic signal for the transcriptional control of photorespiration-related genes in Arabidopsis.

Stefan Timm, Alexandra Florian, Maria Wittmiß, Kathrin Jahnke, Martin Hagemann, Alisdair R Fernie, Hermann Bauwe

Open access · greenAbstract read
In one paragraph

Article in Plant physiology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
4.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 118 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
  6. The 'photosynthetic CCommunications biology · 2024
    Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. AnPlant signaling & behavior · 2023
    Article
  13. Metabolomic response to high light from pgrl1 and pgr5 mutants of Chlamydomonas reinhardtii.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2023
    Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. WillMetabolites · 2021
    Article
  19. Metabolite Profiling inMetabolites · 2021
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Stefan TimmPlant Physiology Department, University of Rostock, D-18051 Rostock, Germany. stefan.timm@uni-rostock.de
Alexandra Florian
Maria Wittmiß
Kathrin Jahnke
Martin Hagemann
Alisdair R Fernie
Hermann Bauwe
University of Rostock · DEMax Planck Institute of Molecular Plant Physiology · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Photosynthetic carbon assimilation including photorespiration is dynamically regulated during the day/night cycle. This includes transcriptional regulation, such as the light induction of corresponding genes, but little is known about the contribution of photorespiratory metabolites to the regulation of gene expression. Here, we examined diurnal changes in the levels of photorespiratory metabolites, of enzymes of the photorespiratory carbon cycle, and of corresponding transcripts in wild-type plants of Arabidopsis (Arabidopsis thaliana) and in a mutant with altered photorespiratory flux due to the absence of the peroxisomal enzyme Hydroxypyruvate Reductase1 (HPR1). Metabolomics of the wild type showed that the relative amounts of most metabolites involved in photorespiration increased after the onset of light, exhibited maxima at the end of the day, and decreased during the night. In accordance with those findings, both the amounts of messenger RNAs encoding photorespiratory enzymes and the respective protein contents showed a comparable accumulation pattern. Deletion of HPR1 did not significantly alter most of the metabolite patterns relative to wild-type plants; only serine accumulated to a constitutively elevated amount in this mutant. In contrast, the hpr1 mutation resulted in considerable deregulation of the transcription of photorespiration-related genes. This transcriptional deregulation could also be induced by the external application of l-serine but not glycine to the Arabidopsis wild type, suggesting that serine acts as a metabolic signal for the transcriptional regulation of photorespiration, particularly in the glycine-to-serine interconversion reactions.

Indexed as

Cell RespirationGene Expression Regulation, PlantArabidopsisArabidopsis ProteinsCircadian RhythmGlycineLightMetabolomicsPeroxisomesPhotosynthesisPlant LeavesPlants, Genetically ModifiedRNA, MessengerRNA, PlantSeedlingsSequence DeletionArabidopsis ProteinsEMU protein, ArabidopsisGlycineRNA, MessengerRNA, PlantSerine

Identifiers

PMID23471132
PMCPMC3641216
OpenAlexW1973810629

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.