Evidence map›Paper›PMID 23471000›Full record

ArticleNucleic acids research2013

Degradation of initiator tRNAMet by Xrn1/2 via its accumulation in the nucleus of heat-treated HeLa cells.

Kazunori Watanabe, Ryu Miyagawa, Chie Tomikawa, Rie Mizuno, Akihisa Takahashi, Hiroyuki Hori, Kenichi Ijiri

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
0.7field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 51 citations in OpenAlex.

  1. Article
  2. Article
  3. Mettl1-dependent mNature communications · 2024
    Article
  4. Article
  5. Review
  6. Review
  7. Review
  8. Direct sequencing of totalRNA (New York, N.Y.) · 2023
    Article
  9. The life and times of a tRNA.RNA (New York, N.Y.) · 2023
    Review
  10. Article
  11. Article
  12. Review
  13. Article
  14. The impact of mistranslation on phenotypic variability and fitness.Evolution; international journal of organic evolution · 2021
    Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Kazunori WatanabeRadioisotope Center, The University of Tokyo, 2-11-16 Yayoi, Bunkyo-ku, Tokyo 113-0032, Japan. watanabe@ric.u-tokyo.ac.jp
Ryu Miyagawa
Chie Tomikawa
Rie Mizuno
Akihisa Takahashi
Hiroyuki Hori
Kenichi Ijiri
The University of Tokyo · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Stress response mechanisms that modulate the dynamics of tRNA degradation and accumulation from the cytoplasm to the nucleus have been studied in yeast, the rat hepatoma and human cells. In the current study, we investigated tRNA degradation and accumulation in HeLa cells under various forms of stress. We found that initiator tRNA(Met) (tRNA(iMet)) was specifically degraded under heat stress. Two exonucleases, Xrn1 and Xrn2, are involved in the degradation of tRNA(iMet) in the cytoplasm and the nucleus, respectively. In addition to degradation, we observed accumulation of tRNA(iMet) in the nucleus. We also found that the mammalian target of rapamycin (mTOR), which regulates tRNA trafficking in yeast, is partially phosphorylated at Ser2448 in the presence of rapamycin and/or during heat stress. Our results suggest phosphorylation of mTOR may correlate with accumulation of tRNA(iMet) in heat-treated HeLa cells.

Indexed as

Hot TemperatureBase SequenceCell NucleusExoribonucleasesHeLa CellsHumansMicrotubule-Associated ProteinsMolecular Sequence DataRNA, Transfer, MetTOR Serine-Threonine KinasesExoribonucleasesMicrotubule-Associated ProteinsRNA, Transfer, MetTOR Serine-Threonine KinasesXRN1 protein, humanXRN2 protein, human

Identifiers

PMID23471000
PMCPMC3632136
OpenAlexW1978486300

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.