Evidence map›Paper›PMID 23469254›Full record

ArticlePloS one2013

Kinetic and spectroscopic studies of bicupin oxalate oxidase and putative active site mutants.

Ellen W Moomaw, Eric Hoffer, Patricia Moussatche, John C Salerno, Morgan Grant, Bridget Immelman, Richard Uberto, Andrew Ozarowski, Alexander Angerhofer

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
3.2field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 20 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Ellen W MoomawDepartment of Chemistry and Biochemistry, Kennesaw State University, Kennesaw, Georgia, United States of America. emoomaw@kennesaw.edu
Eric Hoffer
Patricia Moussatche
John C Salerno
Morgan Grant
Bridget Immelman
Richard Uberto
Andrew Ozarowski
Alexander Angerhofer
Kennesaw State University · USFoundation for Applied Molecular Evolution · USNational High Magnetic Field Laboratory · USUniversity of Florida · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ceriporiopsis subvermispora oxalate oxidase (CsOxOx) is the first bicupin enzyme identified that catalyzes manganese-dependent oxidation of oxalate. In previous work, we have shown that the dominant contribution to catalysis comes from the monoprotonated form of oxalate binding to a form of the enzyme in which an active site carboxylic acid residue must be unprotonated. CsOxOx shares greatest sequence homology with bicupin microbial oxalate decarboxylases (OxDC) and the 241-244DASN region of the N-terminal Mn binding domain of CsOxOx is analogous to the lid region of OxDC that has been shown to determine reaction specificity. We have prepared a series of CsOxOx mutants to probe this region and to identify the carboxylate residue implicated in catalysis. The pH profile of the D241A CsOxOx mutant suggests that the protonation state of aspartic acid 241 is mechanistically significant and that catalysis takes place at the N-terminal Mn binding site. The observation that the D241S CsOxOx mutation eliminates Mn binding to both the N- and C- terminal Mn binding sites suggests that both sites must be intact for Mn incorporation into either site. The introduction of a proton donor into the N-terminal Mn binding site (CsOxOx A242E mutant) does not affect reaction specificity. Mutation of conserved arginine residues further support that catalysis takes place at the N-terminal Mn binding site and that both sites must be intact for Mn incorporation into either site.

Indexed as

ProtonsArginineAspartic AcidBiocatalysisCatalytic DomainCoriolaceaeFungal ProteinsHydrogen-Ion ConcentrationKineticsManganeseModels, MolecularMutationOxalatesOxidoreductasesPichiaProtein BindingArginineAspartic AcidFungal ProteinsManganeseoxalate oxidaseOxalatesOxidoreductasesProtonsRecombinant Proteins

Identifiers

PMID23469254
PMCPMC3585803
OpenAlexW2015078566

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.