ArticlePloS one2013
Identification and expression analysis of microRNAs at the grain filling stage in rice(Oryza sativa L.)via deep sequencing.
Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.
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Who cites it
43 citing papers in PubMed.
- High Daytime Temperature Responsive MicroRNA Profiles in Developing Grains of Rice Varieties with Contrasting Chalkiness.International journal of molecular sciences · 2023Article
- Cytological, transcriptome and miRNome temporal landscapes decode enhancement of rice grain size.BMC biology · 2023Article
- Environmental Stimuli: A Major Challenge during Grain Filling in Cereals.International journal of molecular sciences · 2023Review
- Du13 encodes a CPlant biotechnology journal · 2022Article
- Triggered in distress: a miRNA-controlled switch for drought-induced ABA biosynthesis in rice.Plant physiology · 2022Article
- miR2105 and the kinase OsSAPK10 co-regulate OsbZIP86 to mediate drought-induced ABA biosynthesis in rice.Plant physiology · 2022Article
- An Insight Into Pentatricopeptide-Mediated Chloroplast NecrosisFrontiers in genetics · 2022Article
- Effect of Panicle Morphology on Grain Filling and Rice Yield: Genetic Control and Molecular Regulation.Frontiers in genetics · 2022Review
- Crosstalk during the Carbon-Nitrogen Cycle That Interlinks the Biosynthesis, Mobilization and Accumulation of Seed Storage Reserves.International journal of molecular sciences · 2021Review
- The Elite Alleles of OsSPL4 Regulate Grain Size and Increase Grain Yield in Rice.Rice (New York, N.Y.) · 2021Article
- Genome-wide in silico analysis of long intergenic non-coding RNAs from rice peduncles at the heading stage.Physiology and molecular biology of plants : an international journal of functional plant biology · 2021Article
- Dissecting the meteorological and genetic factors affecting rice grain quality in Northeast China.Genes & genomics · 2021Article
- MircroRNA Profiles of Early Rice Inflorescence Revealed a Specific miRNA5506 Regulating Development of Floral Organs and Female Megagametophyte in Rice.International journal of molecular sciences · 2021Article
- MicroRNAs modulate ethylene induced retrograde signal for rice endosperm starch biosynthesis by default expression of transcriptome.Scientific reports · 2021Article
- Integrated Analysis of Small RNA, Transcriptome and Degradome Sequencing Provides New Insights into Floral Development and Abscission in Yellow Lupine (International journal of molecular sciences · 2019Article
- miR1432-OsACOT (Acyl-CoA thioesterase) module determines grain yield via enhancing grain filling rate in rice.Plant biotechnology journal · 2019Article
- Evaluation of grain yield based on digital images of rice canopy.Plant methods · 2019Article
- In silico identification and characterization of a diverse subset of conserved microRNAs in bioenergy crop Arundo donax L.Scientific reports · 2018Article
- Unravelling miRNA regulation in yield of rice (Oryza sativa) based on differential network model.Scientific reports · 2018Article
- Drought or/and Heat-Stress Effects on Seed Filling in Food Crops: Impacts on Functional Biochemistry, Seed Yields, and Nutritional Quality.Frontiers in plant science · 2018Review
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Authors and funding
6 authors.
Funding
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Abstract
MicroRNAs (miRNAs) have been shown to play crucial roles in the regulation of plant development. In this study, high-throughput RNA-sequencing technology was used to identify novel miRNAs, and to reveal miRNAs expression patterns at different developmental stages during rice (Oryza sativa L.) grain filling. A total of 434 known miRNAs (380, 402, 390 and 392 at 5, 7, 12 and 17 days after fertilization, respectively.) were obtained from rice grain. The expression profiles of these identified miRNAs were analyzed and the results showed that 161 known miRNAs were differentially expressed during grain development, a high proportion of which were up-regulated from 5 to 7 days after fertilization. In addition, sixty novel miRNAs were identified, and five of these were further validated experimentally. Additional analysis showed that the predicted targets of the differentially expressed miRNAs may participate in signal transduction, carbohydrate and nitrogen metabolism, the response to stimuli and epigenetic regulation. In this study, differences were revealed in the composition and expression profiles of miRNAs among individual developmental stages during the rice grain filling process, and miRNA editing events were also observed, analyzed and validated during this process. The results provide novel insight into the dynamic profiles of miRNAs in developing rice grain and contribute to the understanding of the regulatory roles of miRNAs in grain filling.
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