Evidence map›Paper›PMID 23469164›Full record

ArticlePloS one2013

Genome-wide ENU mutagenesis in combination with high density SNP analysis and exome sequencing provides rapid identification of novel mouse models of developmental disease.

Georgina Caruana, Peter G Farlie, Adam H Hart, Stefan Bagheri-Fam, Megan J Wallace, Michael S Dobbie, Christopher T Gordon, Kerry A Miller, Belinda Whittle, Helen E Abud and 5 more

Abstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Identification of novel genes includingFrontiers in endocrinology · 2023
    Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Cilia/Ift protein and motor -related bone diseases and mouse models.Frontiers in bioscience (Landmark edition) · 2015
    Review
  8. Article
  9. Ion Torrent sequencing for conducting genome-wide scans for mutation mapping analysis.Mammalian genome : official journal of the International Mammalian Genome Society · 2014
    Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Georgina CaruanaDepartment of Anatomy and Developmental Biology, Monash University, Clayton, Melbourne, Australia. georgina.caruana@monash.edu
Peter G Farlie
Adam H Hart
Stefan Bagheri-Fam
Megan J Wallace
Michael S Dobbie
Christopher T Gordon
Kerry A Miller
Belinda Whittle
Helen E Abud
Ruth M Arkell
Timothy J Cole
Vincent R Harley
Ian M Smyth
John F Bertram

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundMice harbouring gene mutations that cause phenotypic abnormalities during organogenesis are invaluable tools for linking gene function to normal development and human disorders. To generate mouse models harbouring novel alleles that are involved in organogenesis we conducted a phenotype-driven, genome-wide mutagenesis screen in mice using the mutagen N-ethyl-N-nitrosourea (ENU). METHODOLOGY/PRINCIPAL

findingsENU was injected into male C57BL/6 mice and the mutations transmitted through the germ-line. ENU-induced mutations were bred to homozygosity and G3 embryos screened at embryonic day (E) 13.5 and E18.5 for abnormalities in limb and craniofacial structures, skin, blood, vasculature, lungs, gut, kidneys, ureters and gonads. From 52 pedigrees screened 15 were detected with anomalies in one or more of the structures/organs screened. Using single nucleotide polymorphism (SNP)-based linkage analysis in conjunction with candidate gene or next-generation sequencing (NGS) we identified novel recessive alleles for Fras1, Ift140 and Lig1. CONCLUSIONS/SIGNIFICANCE: In this study we have generated mouse models in which the anomalies closely mimic those seen in human disorders. The association between novel mutant alleles and phenotypes will lead to a better understanding of gene function in normal development and establish how their dysfunction causes human anomalies and disease.

Indexed as

Disease Models, AnimalPolymorphism, Single NucleotideAllelesAnimalsCongenital AbnormalitiesDNA Ligase ATPDNA LigasesEthylnitrosoureaExomeExtracellular Matrix ProteinsFemaleGenome-Wide Association StudyGenotypeGerm-Line MutationHigh-Throughput Nucleotide SequencingHomozygoteDNA Ligase ATPDNA LigasesEthylnitrosoureaExtracellular Matrix ProteinsFras1 protein, mouseLeft-Right Determination FactorsLIG1 protein, humanLig1 protein, mouseMutagens

Identifiers

PMID23469164
PMCPMC3585849

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.