Evidence map›Paper›PMID 23468661›Full record

ArticlePLoS genetics2013

MicroRNA-3148 modulates allelic expression of toll-like receptor 7 variant associated with systemic lupus erythematosus.

Yun Deng, Jian Zhao, Daisuke Sakurai, Kenneth M Kaufman, Jeffrey C Edberg, Robert P Kimberly, Diane L Kamen, Gary S Gilkeson, Chaim O Jacob, R Hal Scofield and 30 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 73 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
73citing papers in PubMed, 2 pooled it
7.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

73 citing papers in PubMed, 2 syntheses or guidelines pooled it, 125 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Trial
  4. Review
  5. Review
  6. Article
  7. Review
  8. Review
  9. Extrafollicular CD19Journal of translational autoimmunity · 2024
    Article
  10. Review
  11. Review
  12. Review
  13. Article
  14. Frontiers in immunology · 2024
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Targeting DAMPs with nucleic acid scavengers to treat lupus.Translational research : the journal of laboratory and clinical medicine · 2022
    Review
  20. Article

13 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

40 authors at 18 institutions in 6 countries.

Yun DengDivision of Rheumatology, University of California Los Angeles, Los Angeles, California, USA.
Jian Zhao
Daisuke Sakurai
Kenneth M Kaufman
Jeffrey C Edberg
Robert P Kimberly
Diane L Kamen
Gary S Gilkeson
Chaim O Jacob
R Hal Scofield
Carl D Langefeld
Jennifer A Kelly
Rosalind Ramsey-Goldman
Michelle A Petri
John D Reveille
Luis M Vilá
Graciela S Alarcón
Timothy J Vyse
Bernardo A Pons-Estel
Argentine Collaborative Group
Barry I Freedman
Patrick M Gaffney
Kathy Moser Sivils
Judith A James
Peter K Gregersen
Juan-Manuel Anaya
Timothy B Niewold
Joan T Merrill
Lindsey A Criswell
Anne M Stevens
Susan A Boackle
Rita M Cantor
Weiling Chen
Jeniffer M Grossman
Bevra H Hahn
John B Harley
Marta E Alarcόn-Riquelme
BIOLUPUS and GENLES networks
Elizabeth E Brown
Betty P Tsao
University of California, Los Angeles · USOklahoma Medical Research Foundation · USUniversity of Alabama at Birmingham · USCincinnati Children's Hospital Medical Center · USMayo Clinic · USMedical University of South Carolina · USNorthwell Health · USSeattle Children's Hospital · USWake Forest University · USCentro Científico Tecnólogico - Rosario · ARJohns Hopkins University · USKing's College London · GBNorthwestern University · USThe University of Texas Health Science Center at Houston · USUnited States Department of Veterans Affairs · USUniversity of California, San Francisco · USUniversity of Puerto Rico, Medical Sciences Campus · PRUniversity of Southern California · US

Funding

University of Colorado Cancer Center Support Grant - Lung Cancer Patient-Derived Xenografts with Autologous Human Immune SystemsP30CA046934 · NCI · UNIVERSITY OF COLORADO DENVER · PI James V Degregori · 1988 to 2026
$117.0M
Institute for Clinical and Translational Research (UL1)UL1RR025005 · NCRR · JOHNS HOPKINS UNIVERSITY · PI FORD, DANIEL ERNEST · 2007 to 2011
$75.8M
Tracking and Evaluation CoreU54GM104938 · NIGMS · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI PAUL G SPICER · 2013 to 2026
$68.2M
UCLA Clinical and Translational Science InstituteUL1TR000124 · NCATS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI DUBINETT, STEVEN M. · 2012 to 2015
$57.0M
INSTITUTE FOR TRANSLATIONAL HEALTH SCIENCE (UL1): BPCAUL1RR025014 · NCRR · UNIVERSITY OF WASHINGTON · PI DISIS, MARY L. · 2007 to 2011
$51.5M
ZD1839 FOR MALIGNANT ASTROCYTOMA OR GLIOBLASTOMA AND MENINGIOMAM01RR000079 · NCRR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KESSLER, DAVID A · 1985 to 2006
$26.0M
TRANSLATIONAL RESEARCH UNIVERSITY OF CHICAGO: CLINICAL TRIALSUL1RR024999 · NCRR · UNIVERSITY OF CHICAGO · PI SOLWAY, JULIAN · 2007 to 2011
$25.3M
MULTIDISCIPLINARY CLINICAL AND TRANSLATIONAL SCIENCE (MCTS) PROGRAM (UL1)UL1RR025741 · NCRR · NORTHWESTERN UNIVERSITY AT CHICAGO · PI GREENLAND, PHILIP · 2008 to 2011
$24.7M
VALIDATING NOVEL GENES IMPLICATED IN LEUKOCYTE CHEMOTAXISP20RR020143 · NCRR · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI GAFFNEY, PATRICK M · 2004 to 2011
$21.0M
Colorado Clinical and Translational Science Institute (UL1)UL1TR000154 · NCATS · UNIVERSITY OF COLORADO DENVER · PI SOKOL, RONALD J. · 2012 to 2013
$20.4M
UCLA CLINICAL AND TRANSLATIONAL SCIENCE INSTITUTEUL1RR033176 · NCRR · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI DUBINETT, STEVEN M. · 2011 to 2011
$15.5M
Program Project in the Genetics of SLEP01AR049084 · NIAMS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI KIMBERLY, ROBERT P. · 2002 to 2012
$12.7M
NCATS NIH HHS UL1 TR000124NCATS NIH HHS UL1TR000124NCATS NIH HHS UL1 TR000150NCATS NIH HHS UL1 TR000154NCATS NIH HHS UL1 TR000165NCATS NIH HHS UL1TR000165NCI NIH HHS P30 CA046934NCI NIH HHS R01 CA141700NCI NIH HHS R01CA141700NCRR NIH HHS M01 RR000079NCRR NIH HHS M01RR-00079NCRR NIH HHS P20 RR020143NCRR NIH HHS P20RR020143NCRR NIH HHS UL1 RR024999NCRR NIH HHS UL1RR024999NCRR NIH HHS UL1 RR025005NCRR NIH HHS UL1RR025005NCRR NIH HHS UL1 RR025014NCRR NIH HHS UL1RR025014-02NCRR NIH HHS UL1 RR025741NCRR NIH HHS UL1RR025741NCRR NIH HHS UL1 RR029882NCRR NIH HHS UL1RR029882NCRR NIH HHS UL1 RR033176NCRR NIH HHS UL1RR033176NIAID NIH HHS K08 AI083790NIAID NIH HHS K08AI083790NIAID NIH HHS K24 AI078004NIAID NIH HHS L30 AI071651NIAID NIH HHS L30AI071651NIAID NIH HHS P01 AI083194NIAID NIH HHS P01AI083194NIAID NIH HHS R01 AI063274NIAID NIH HHS R01AI063274NIAID NIH HHS R21 AI070304NIAID NIH HHS R21AI070304NIAID NIH HHS R37 AI024717NIAID NIH HHS R37AI024717NIAID NIH HHS U01 AI090909NIAID NIH HHS U01AI090909NIAID NIH HHS U01 AI101934NIAID NIH HHS U01AI101934NIAID NIH HHS U19 AI082714NIAID NIH HHS U19AI082714NIAMS NIH HHS K24 AR002138NIAMS NIH HHS K24AR002138NIAMS NIH HHS N01 AR062277NIAMS NIH HHS P01 AR049084NIAMS NIH HHS P01 AR052915NIAMS NIH HHS P01AR052915NIAMS NIH HHS P01AR49084NIAMS NIH HHS P30 AR048311NIAMS NIH HHS P30 AR053483NIAMS NIH HHS P30AR053483NIAMS NIH HHS P30AR48311NIAMS NIH HHS P60 AR030692NIAMS NIH HHS P60 AR049459NIAMS NIH HHS P60AR049459NIAMS NIH HHS P60 AR053308NIAMS NIH HHS P60AR053308NIAMS NIH HHS P60 AR062755NIAMS NIH HHS P60AR30692NIAMS NIH HHS R01 AR033062NIAMS NIH HHS R01 AR042460NIAMS NIH HHS R01AR042460NIAMS NIH HHS R01 AR043274NIAMS NIH HHS R01AR043274NIAMS NIH HHS R01 AR043727NIAMS NIH HHS R01 AR043814NIAMS NIH HHS R01AR043814NIAMS NIH HHS R01 AR051545NIAMS NIH HHS R01AR051545-01A2NIAMS NIH HHS R01 AR057172NIAMS NIH HHS R01AR057172NIAMS NIH HHS R01AR33062NIAMS NIH HHS R01AR43727NIAMS NIH HHS RC1 AR058621NIAMS NIH HHS RC1AR058621NIAMS NIH HHS RC2 AR058959NIAMS NIH HHS RC2AR058959NIGMS NIH HHS P30 GM103510NIGMS NIH HHS P30GM103510NIGMS NIH HHS U54 GM104938
6 · The paper itself

Abstract

We previously reported that the G allele of rs3853839 at 3'untranslated region (UTR) of Toll-like receptor 7 (TLR7) was associated with elevated transcript expression and increased risk for systemic lupus erythematosus (SLE) in 9,274 Eastern Asians [P = 6.5×10(-10), odds ratio (OR) (95%CI) = 1.27 (1.17-1.36)]. Here, we conducted trans-ancestral fine-mapping in 13,339 subjects including European Americans, African Americans, and Amerindian/Hispanics and confirmed rs3853839 as the only variant within the TLR7-TLR8 region exhibiting consistent and independent association with SLE (Pmeta = 7.5×10(-11), OR = 1.24 [1.18-1.34]). The risk G allele was associated with significantly increased levels of TLR7 mRNA and protein in peripheral blood mononuclear cells (PBMCs) and elevated luciferase activity of reporter gene in transfected cells. TLR7 3'UTR sequence bearing the non-risk C allele of rs3853839 matches a predicted binding site of microRNA-3148 (miR-3148), suggesting that this microRNA may regulate TLR7 expression. Indeed, miR-3148 levels were inversely correlated with TLR7 transcript levels in PBMCs from SLE patients and controls (R(2) = 0.255, P = 0.001). Overexpression of miR-3148 in HEK-293 cells led to significant dose-dependent decrease in luciferase activity for construct driven by TLR7 3'UTR segment bearing the C allele (P = 0.0003). Compared with the G-allele construct, the C-allele construct showed greater than two-fold reduction of luciferase activity in the presence of miR-3148. Reduced modulation by miR-3148 conferred slower degradation of the risk G-allele containing TLR7 transcripts, resulting in elevated levels of gene products. These data establish rs3853839 of TLR7 as a shared risk variant of SLE in 22,613 subjects of Asian, EA, AA, and Amerindian/Hispanic ancestries (Pmeta  = 2.0×10(-19), OR = 1.25 [1.20-1.32]), which confers allelic effect on transcript turnover via differential binding to the epigenetic factor miR-3148.

Indexed as

Genetic Predisposition to DiseaseToll-Like Receptor 73' Untranslated RegionsAllelesAsian PeopleBlack or African AmericanGene Expression RegulationHEK293 CellsHispanic or LatinoHumansLupus Erythematosus, SystemicMicroRNAsPolymorphism, Single NucleotideWhite People3' Untranslated RegionsMicroRNAsMIRN3148 microRNA, humanTLR7 protein, humanToll-Like Receptor 7

Identifiers

PMID23468661
PMCPMC3585142
OpenAlexW2052586618

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.