Evidence map›Paper›PMID 23468628›Full record

ArticlePLoS pathogens2013

Functional plasticity in the type IV secretion system of Helicobacter pylori.

Roberto M Barrozo, Cara L Cooke, Lori M Hansen, Anna M Lam, Jennifer A Gaddy, Elizabeth M Johnson, Taryn A Cariaga, Giovanni Suarez, Richard M Peek, Timothy L Cover and 1 more

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 89 papers.

0numbers the graph read from it
0cells of the map it votes in
89citing papers in PubMed
13.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

89 citing papers in PubMed, 146 citations in OpenAlex.

  1. Article
  2. Microbiology and molecular biology reviews : MMBR · 2026
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  3. Article
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  5. 3 Biotech · 2025
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  6. Infection and immunity · 2025
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  7. Effect ofImmunotherapy · 2025
    Review
  8. Article
  9. Review
  10. Roles of the components of theFuture microbiology · 2024
    Review
  11. Comparative Analysis of T4SS Molecular Architectures.Journal of microbiology and biotechnology · 2023
    Review
  12. A Proposal for a Consolidated Structural Model of the CagY Protein ofInternational journal of molecular sciences · 2023
    Article
  13. Role of the CagY antenna projection inInfection and immunity · 2023
    Article
  14. Article
  15. Article
  16. A Positively SelectedInfection and immunity · 2023
    Article
  17. Review
  18. Pathogenomics of Helicobacter pylori.Current topics in microbiology and immunology · 2023
    Review
  19. Article
  20. Article

29 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Roberto M BarrozoCenter for Comparative Medicine, University of California Davis, Davis, California, United States of America.
Cara L Cooke
Lori M Hansen
Anna M Lam
Jennifer A Gaddy
Elizabeth M Johnson
Taryn A Cariaga
Giovanni Suarez
Richard M Peek
Timothy L Cover
Jay V Solnick
University of California, Davis · USVanderbilt University · US

Funding

National Institute on Aging (NIA) ColonyP51OD011107 · OD · UNIVERSITY OF CALIFORNIA AT DAVIS · PI Simon J. Atkinson · 2012 to 2026
$191.5M
Role of Iron and B-Catenin Activation in Gastric CarcinogenesisP01CA116087 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI RICHARD M. PEEK · 2009 to 2026
$27.5M
H.Pylori Relationship to Digestive Diseases and CancerR01CA077955 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI RICHARD M. PEEK · 2003 to 2026
$9.7M
Helicobacter Pylori and Gastrointestinal BiologyR01DK058587 · NIDDK · VANDERBILT UNIVERSITY MEDICAL CENTER · PI PEEK, RICHARD M. · 2001 to 2024
$7.8M
Animal Models of Infectious Diseases Training ProgramT32AI060555 · NIAID · UNIVERSITY OF CALIFORNIA DAVIS · PI MCSORLEY, STEPHEN J · 2004 to 2025
$3.3M
Modulation of Outer Membrane Protein Expressin in Helicobacter pyloriR01AI070803 · NIAID · UNIVERSITY OF CALIFORNIA AT DAVIS · PI SOLNICK, JAY V. · 2008 to 2012
$2.4M
Analysis of the H. Pylori cag pathogenicity islandR01AI068009 · NIAID · VANDERBILT UNIVERSITY · PI COVER, TIMOTHY L · 2008 to 2012
$1.9M
Serum biomarkers for early detection of H. pylori-associated gastric cancerR01CA136647 · NCI · UNIVERSITY OF CALIFORNIA AT DAVIS · PI SOLNICK, JAY V. · 2009 to 2013
$1.5M
Role of H. pylori Outer Membrane Proteins in Colonization and Host ResponseR01AI081037 · NIAID · UNIVERSITY OF CALIFORNIA AT DAVIS · PI SOLNICK, JAY V. · 2009 to 2013
$1.1M
Metal-dependent regulation of the H. pylori Cag type IV secretion systemF32AI102568 · NIAID · VANDERBILT UNIVERSITY · PI GADDY, JENNIFER A · 2012 to 2012
$48k
NCI NIH HHS CA116087NCI NIH HHS P01 CA116087NCI NIH HHS R01 CA077955NCI NIH HHS R01 CA136647NCI NIH HHS R01 CA77955NIAID NIH HHS AI068009NIAID NIH HHS F32 AI02568NIAID NIH HHS F32 AI102568NIAID NIH HHS R01 AI068009NIAID NIH HHS R01 AI070803NIAID NIH HHS R01 AI081037NIAID NIH HHS T32 AI060555NIAID NIH HHS T32 AI60555NIDDK NIH HHS R01 DK058587NIDDK NIH HHS R01 DK58587NIH HHS P51 OD011107
6 · The paper itself

Abstract

Helicobacter pylori causes clinical disease primarily in those individuals infected with a strain that carries the cytotoxin associated gene pathogenicity island (cagPAI). The cagPAI encodes a type IV secretion system (T4SS) that injects the CagA oncoprotein into epithelial cells and is required for induction of the pro-inflammatory cytokine, interleukin-8 (IL-8). CagY is an essential component of the H. pylori T4SS that has an unusual sequence structure, in which an extraordinary number of direct DNA repeats is predicted to cause rearrangements that invariably yield in-frame insertions or deletions. Here we demonstrate in murine and non-human primate models that immune-driven host selection of rearrangements in CagY is sufficient to cause gain or loss of function in the H. pylori T4SS. We propose that CagY functions as a sort of molecular switch or perhaps a rheostat that alters the function of the T4SS and "tunes" the host inflammatory response so as to maximize persistent infection.

Indexed as

AnimalsAntigens, BacterialBacterial ProteinsBacterial Secretion SystemsDNA, BacterialFemaleHelicobacter InfectionsHelicobacter pyloriHost-Pathogen InteractionsInterleukin-8Macaca mulattaMaleMiceMice, Inbred C57BLMice, KnockoutMicroscopy, Electron, ScanningAntigens, BacterialBacterial ProteinsBacterial Secretion SystemscagA protein, Helicobacter pyloriDNA, BacterialInterleukin-8Virulence Factors

Identifiers

PMID23468628
PMCPMC3585145
OpenAlexW1973830631

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.