Evidence map›Paper›PMID 23468430›Full record

ArticleGenes & development2013

Intronic sequence elements impede exon ligation and trigger a discard pathway that yields functional telomerase RNA in fission yeast.

Ram Kannan, Sean Hartnett, Rodger B Voelker, J Andrew Berglund, Jonathan P Staley, Peter Baumann

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
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  7. Review
  8. Article
  9. New perspectives on telomerase RNA structure and function.Wiley interdisciplinary reviews. RNA · 2018
    Review
  10. Article
  11. Article
  12. Article
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  15. Article
  16. Article
  17. Review
  18. Article
  19. Non-mRNA 3' end formation: how the other half lives.Wiley interdisciplinary reviews. RNA
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 5 institutions in 1 country.

Ram KannanHoward Hughes Medical Institute, Stowers Institute for Medical Research, Kansas City, Missouri 64110, USA.
Sean Hartnett
Rodger B Voelker
J Andrew Berglund
Jonathan P Staley
Peter Baumann
University of Oregon · USHoward Hughes Medical Institute · USStowers Institute for Medical Research · USUniversity of Chicago · USUniversity of Kansas Medical Center · US

Funding

Mechanisms for Rearranging RNA during Pre-mRNA Splicing - Renewal 01R01GM062264 · NIGMS · UNIVERSITY OF CHICAGO · PI STALEY, JONATHAN P · 2001 to 2019
$5.3M
Targeting a Toxic RNA with Small MoleculesR01AR059833 · NIAMS · UNIVERSITY OF OREGON · PI BERGLUND, ANDREW · 2010 to 2014
$1.7M
Howard Hughes Medical InstituteNIAMS NIH HHS AR059833NIAMS NIH HHS R01 AR059833NIGMS NIH HHS GM062264NIGMS NIH HHS R01 GM062264
6 · The paper itself

Abstract

The fission yeast telomerase RNA (TER1) precursor harbors an intron immediately downstream from its mature 3' end. Unlike most introns, which are removed from precursor RNAs by the spliceosome in two sequential but tightly coupled transesterification reactions, TER1 only undergoes the first cleavage reaction during telomerase RNA maturation. The mechanism underlying spliceosome-mediated 3' end processing has remained unclear. We now demonstrate that a strong branch site (BS), a long distance to the 3' splice site (3' SS), and a weak polypyrimidine (Py) tract act synergistically to attenuate the transition from the first to the second step of splicing. The observation that a strong BS antagonizes the second step of splicing in the context of TER1 suggests that the BS-U2 snRNA interaction is disrupted after the first step and thus much earlier than previously thought. The slow transition from first to second step triggers the Prp22 DExD/H-box helicase-dependent rejection of the cleaved products and Prp43-dependent "discard" of the splicing intermediates. Our findings explain how the spliceosome can function in 3' end processing and provide new insights into the mechanism of splicing.

Indexed as

Base SequenceExonsIntronsNuclear ProteinsRibonucleoproteinsRNARNA, FungalRNA SplicingSchizosaccharomycesSpliceosomesSplicing Factor U2AFTelomeraseNuclear ProteinsRibonucleoproteinsRNARNA, FungalSplicing Factor U2AFTelomeraseTer1 telomerase subunit, S pombe

Identifiers

PMID23468430
PMCPMC3613610
OpenAlexW2170176918

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.