Evidence map›Paper›PMID 23467783›Full record

ArticleEuropean biophysics journal : EBJ2013

Overestimated accuracy of circular dichroism in determining protein secondary structure.

Kailei Lin, Huayan Yang, Zhengya Gao, Feng Li, Shaoning Yu

RetractedAbstract readRetracted Publication
PubMed Publisher
In one paragraph

Article in European biophysics journal : EBJ, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It has been retracted, and should not be counted. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
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  4. An overview of osteocalcin progress.Journal of bone and mineral metabolism · 2016
    Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Kailei LinDepartment of Chemistry, Fudan University, Shanghai, 200433, China.
Huayan Yang
Zhengya Gao
Feng Li
Shaoning Yu
Fudan University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Circular dichroism (CD) is a spectroscopic technique widely used for estimating protein secondary structures in aqueous solution, but its accuracy has been doubted in recent work. In the present paper, the contents of nine globular proteins with known secondary structures were determined by CD spectroscopy and Fourier transform infrared spectroscopy (FTIR) in aqueous solution. A large deviation was found between the CD spectra and X-ray data, even when the experimental conditions were optimized. The content determined by FTIR was in good agreement with the X-ray crystallography data. Therefore, CD spectra are not recommended for directly calculating the content of a protein's secondary structure.

Indexed as

AnimalsCattleChickensCircular DichroismHemoglobinsHorsesMuramidaseMyoglobinProteinsProtein Structure, SecondaryRabbitsReproducibility of ResultsRibonuclease, PancreaticSpectroscopy, Fourier Transform InfraredTemperatureX-RaysHemoglobinsMuramidaseMyoglobinProteinsRibonuclease, Pancreatic

Identifiers

PMID23467783
OpenAlexW2327771630

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.