Evidence map›Paper›PMID 23466598›Full record

ArticleScientific reports2013

SOXC transcription factors in mantle cell lymphoma: the role of promoter methylation in SOX11 expression.

Agata Magdalena Wasik, Martin Lord, Xiao Wang, Fang Zong, Patrik Andersson, Eva Kimby, Birger Christensson, Mohsen Karimi, Birgitta Sander

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Highly sensitive and specificHaematologica · 2020
    Article
  8. SOX11: friend or foe in tumor prevention and carcinogenesis?Therapeutic advances in medical oncology · 2019
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Agata Magdalena WasikDepartment of Laboratory Medicine, Division of Pathology, Karolinska Institutet and Karolinska University Hospital, SE 141 86 Stockholm. agata.wasik@ki.se
Martin Lord
Xiao Wang
Fang Zong
Patrik Andersson
Eva Kimby
Birger Christensson
Mohsen Karimi
Birgitta Sander
Karolinska University Hospital · SEKarolinska Institutet · SELund University · SEStockholm South General Hospital · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The related transcription factors SOX11, SOX4 and SOX12 (classified as the SOXC family) compete for the same target genes. SOX11 is expressed in most mantle cell lymphomas (MCL) but a small subset is, like normal lymphocytes, SOX11 negative. Here we report the variable expression of SOX4 and high expression of SOX12 in MCL compared to non-malignant tissue. Our results show that the expression of the SOXC genes is highly correlated in SOX11 positive MCL. SOX11 expression is epigenetically regulated but there are partly conflicting results regarding the underlying mechanisms. Here we report that the SOX11 promoter region is hypomethylated in both MCL and normal B-lymphocytes. Methylation at other sites is important for sustaining high SOX11 in MCL since treatment with 5-azacytidine decreased SOX11 levels in SOX11 positive MCL cell lines: Granta519 and Rec1. Furthermore, 5-azacytidine treatment of the SOX11 negative MCL cell line, JVM2, induced SOX4 but not SOX11.

Indexed as

AdultAgedAzacitidineCell Line, TumorDNA MethylationFemaleGene Expression Regulation, NeoplasticHumansLymphoma, Mantle-CellMaleMiddle AgedPromoter Regions, GeneticRNA, MessengerSOXC Transcription FactorsAzacitidineRNA, MessengerSOX11 protein, humanSOXC Transcription Factors

Identifiers

PMID23466598
PMCPMC3590557
OpenAlexW2072140458

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.