Evidence map›Paper›PMID 23465615›Full record

ArticleBlood cells, molecules & diseases2013

Fetal hemoglobin in sickle cell anemia: genetic studies of the Arab-Indian haplotype.

Duyen Ngo, Harold Bae, Martin H Steinberg, Paola Sebastiani, Nadia Solovieff, Clinton T Baldwin, Efthymia Melista, Surinder Safaya, Lindsay A Farrer, Ahmed M Al-Suliman and 10 more

Open access · greenAbstract read
In one paragraph

Article in Blood cells, molecules & diseases, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed, 2 pooled it
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 2 syntheses or guidelines pooled it, 58 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Review
  4. Article
  5. Article
  6. Unique Polymorphisms atJournal of personalized medicine · 2021
    Article
  7. Article
  8. Alpha thalassemia, but not βAnnals of hematology · 2021
    Article
  9. The Genetic and Clinical Significance of Fetal Hemoglobin Expression in Sickle Cell Disease.Medical principles and practice : international journal of the Kuwait University, Health Science Centre · 2021
    Review
  10. Review
  11. Article
  12. New mutations of locus control region in Saudi sickle patients.Saudi journal of biological sciences · 2020
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

20 authors at 7 institutions in 2 countries.

Duyen NgoCenter of Excellence in Sickle Cell Disease, Department of Medicine, Boston University School of Medicine, Boston, MA, USA. duyen.ngo@bmc.org
Harold Bae
Martin H Steinberg
Paola Sebastiani
Nadia Solovieff
Clinton T Baldwin
Efthymia Melista
Surinder Safaya
Lindsay A Farrer
Ahmed M Al-Suliman
Waleed H Albuali
Muneer H Al Bagshi
Zaki Naserullah
Idowu Akinsheye
Patrick Gallagher
Hong-yuan Luo
David H K Chui
John J Farrell
Amein K Al-Ali
Abdulrahman Alsultan
Boston University · USKing Fahad Hospital Hufūf · SAKing Faisal University · SACenter for Human Genetics · USKing Saud University · SAMaternity and Children's Hospital · SAYale University · US

Funding

Genetic Modulation of Sickle Cell DiseaseR01HL068970 · NHLBI · BOSTON UNIVERSITY MEDICAL CAMPUS · PI STEINBERG, MARTIN H. · 2001 to 2010
$7.0M
Genome-Wide Association Studies in Sickle Cell Anemia and in CentenariansR01HL087681 · NHLBI · BOSTON UNIVERSITY MEDICAL CAMPUS · PI STEINBERG, MARTIN H. · 2007 to 2010
$6.0M
Genetic Diversity of Sickle Cell AnemiaRC2HL101212 · NHLBI · BOSTON UNIVERSITY MEDICAL CAMPUS · PI STEINBERG, MARTIN H. · 2009 to 2010
$3.0M
NHLBI NIH HHS R01 HL068970NHLBI NIH HHS R01 HL087681NHLBI NIH HHS RC2 HL101212
6 · The paper itself

Abstract

Sickle cell anemia is common in the Middle East and India where the HbS gene is sometimes associated with the Arab-Indian (AI) β-globin gene (HBB) cluster haplotype. In this haplotype of sickle cell anemia, fetal hemoglobin (HbF) levels are 3-4 fold higher than those found in patients with HbS haplotypes of African origin. Little is known about the genetic elements that modulate HbF in AI haplotype patients. We therefore studied Saudi HbS homozygotes with the AI haplotype (mean HbF 19.2±7.0%, range 3.6 to 39.6%) and employed targeted genotyping of polymorphic sites to explore cis- and trans- acting elements associated with high HbF expression. We also described sequences which appear to be unique to the AI haplotype for which future functional studies are needed to further define their role in HbF modulation. All cases, regardless of HbF concentration, were homozygous for AI haplotype-specific elements cis to HBB. SNPs in BCL11A and HBS1L-MYB that were associated with HbF in other populations explained only 8.8% of the variation in HbF. KLF1 polymorphisms associated previously with high HbF were not present in the 44 patients tested. More than 90% of the HbF variance in sickle cell patients with the AI haplotype remains unexplained by the genetic loci that we studied. The dispersion of HbF levels among AI haplotype patients suggests that other genetic elements modulate the effects of the known cis- and trans-acting regulators. These regulatory elements, which remain to be discovered, might be specific in the Saudi and some other populations where HbF levels are especially high.

Indexed as

AdolescentAdultAllelesAnemia, Sickle CellArabsbeta-GlobinsCarrier ProteinsChildChild, PreschoolFetal HemoglobinGenes, mybGTP-Binding ProteinsHaplotypesHemoglobin, SickleHomeodomain ProteinsHSP70 Heat-Shock ProteinsBCL11A protein, humanbeta-GlobinsCarrier ProteinsDLX4 protein, humanerythroid Kruppel-like factorFetal HemoglobinGTP-Binding ProteinsHBS1L protein, humanHemoglobin, SickleHomeodomain ProteinsHSP70 Heat-Shock ProteinsKruppel-Like Transcription FactorsNuclear ProteinsPeptide Elongation FactorsRepressor ProteinsTranscription Factors

Identifiers

PMID23465615
PMCPMC3647015
OpenAlexW2075295868

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.