Evidence map›Paper›PMID 23463775›Full record

ArticleThe Plant cell2013

Genomic distribution of maize facultative heterochromatin marked by trimethylation of H3K27.

Irina Makarevitch, Steven R Eichten, Roman Briskine, Amanda J Waters, Olga N Danilevskaya, Robert B Meeley, Chad L Myers, Matthew W Vaughn, Nathan M Springer

Open access · greenAbstract readComparative Study
In one paragraph

Article in The Plant cell, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 64 papers.

0numbers the graph read from it
0cells of the map it votes in
64citing papers in PubMed
16.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

64 citing papers in PubMed, 110 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. SDG26 Is Involved in Trichome Control inPlants (Basel, Switzerland) · 2023
    Article
  10. Epigenetic Changes Occurring in Plant Inbreeding.International journal of molecular sciences · 2023
    Review
  11. Article
  12. Article
  13. Review
  14. Article
  15. Review
  16. Will epigenetics be a key player in crop breeding?Frontiers in plant science · 2022
    Review
  17. Epigenome plasticity in plants.Nature reviews. Genetics · 2022
    Review
  18. Review
  19. Epigenome and Epitranscriptome: Potential Resources for Crop Improvement.International journal of molecular sciences · 2021
    Review
  20. Article

4 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Irina MakarevitchBiology Department, Hamline University, Saint Paul, Minesota 55104, USA.
Steven R Eichten
Roman Briskine
Amanda J Waters
Olga N Danilevskaya
Robert B Meeley
Chad L Myers
Matthew W Vaughn
Nathan M Springer
University of Minnesota · USPioneer Hi-Bred · USHamline University · USTexas Advanced Computing Center

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Trimethylation of histone H3 Lys-27 (H3K27me3) plays a critical role in regulating gene expression during plant and animal development. We characterized the genome-wide distribution of H3K27me3 in five developmentally distinct tissues in maize (Zea mays) plants of two genetic backgrounds, B73 and Mo17. There were more substantial differences in the genome-wide profile of H3K27me3 between different tissues than between the two genotypes. The tissue-specific patterns of H3K27me3 were often associated with differences in gene expression among the tissues and most of the imprinted genes that are expressed solely from the paternal allele in endosperm are targets of H3K27me3. A comparison of the H3K27me3 targets in rice (Oryza sativa), maize, and Arabidopsis thaliana provided evidence for conservation of the H3K27me3 targets among plant species. However, there was limited evidence for conserved targeting of H3K27me3 in the two maize subgenomes derived from whole-genome duplication, suggesting the potential for subfunctionalization of chromatin regulation of paralogs. Genomic profiling of H3K27me3 in loss-of-function mutant lines for Maize Enhancer of zeste-like2 (Mez2) and Mez3, two of the three putative H3K27me3 methyltransferases present in the maize genome, suggested partial redundancy of this gene family for maintaining H3K27me3 patterns. Only a portion of the targets of H3K27me3 required Mez2 and/or Mez3, and there was limited evidence for functional consequences of H3K27me3 at these targets.

Indexed as

DNA MethylationGene Expression Regulation, PlantGenome, PlantAllelesArabidopsisChromatin Assembly and DisassemblyDNA, PlantEndospermGene DuplicationGenomic ImprintingGenotypeHeterochromatinHistonesMultigene FamilyMutationOryzaDNA, PlantHeterochromatinHistones

Identifiers

PMID23463775
PMCPMC3634688
OpenAlexW2101331518

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.