Evidence map›Paper›PMID 23463491›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2013

Genomic inversion caused by gamma irradiation contributes to downregulation of a WBC11 homolog in bloomless sorghum.

Hiroshi Mizuno, Hiroyuki Kawahigashi, Jun Ogata, Hiroshi Minami, Hiroyuki Kanamori, Hitoshi Nakagawa, Takashi Matsumoto

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In one paragraph

Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.2field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Frontiers in plant science · 2022
    Article
  3. Genome wide association mapping of epi-cuticular wax genes inPhysiology and molecular biology of plants : an international journal of functional plant biology · 2020
    Article
  4. Article
  5. Article
  6. Molecular mapping and candidate gene analysis of a new epicuticular wax locus in sorghum (Sorghum bicolor L. Moench).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Hiroshi MizunoDivision of Genome and Biodiversity Research, National Institute of Agrobiological Sciences (NIAS), 1-2 Kannondai 2-chome, Tsukuba, Ibaraki 305-8602, Japan. hmizuno@nias.affrc.go.jp
Hiroyuki Kawahigashi
Jun Ogata
Hiroshi Minami
Hiroyuki Kanamori
Hitoshi Nakagawa
Takashi Matsumoto
Institute of Agrobiological Sciences · JPJapan International Research Center for Agricultural Sciences · JPMitsubishi Space Software (Japan) · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Epicuticular wax (bloom) plays important roles in protecting the tissues of sorghum (Sorghum bicolor (L.) Moench) plants from abiotic stresses. However, reducing wax content provides resistance to greenbug and sheath blight-a useful trait in agricultural crops. We generated a sorghum bloomless (bm) mutant by gamma irradiation. One bm population segregated for individuals with and without epicuticular wax at a frequency of 72:22, suggesting that the bm mutation was under the control of a single recessive nuclear gene. Genes differentially expressed in the wild-type and the bm mutant were identified by RNA-seq technology. Of the 31 downregulated genes, Sb06g023280 was the most differentially expressed and was similar to WBC11, which encodes an ABC transporter responsible for wax secretion in Arabidopsis. An inversion of about 1.4 Mb was present in the region upstream of the Sb06g023280 gene in the bm mutant; it is likely that this inversion changed the promoter sequence of the Sb06g023280 gene. Using genomic PCR, we confirmed that six independent F2 bm mutant-phenotype plants carried the same inversion. Therefore, we concluded that the inversion involving the Sb06g023280 gene inhibited wax secretion in the bloomless sorghum.

Indexed as

Gamma RaysATP-Binding Cassette TransportersBreedingCloning, MolecularGene Expression Regulation, PlantHigh-Throughput Nucleotide SequencingReal-Time Polymerase Chain ReactionSequence InversionSorghumWaxesATP-Binding Cassette TransportersWaxes

Identifiers

PMID23463491
OpenAlexW1984244133

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.