Evidence map›Paper›PMID 23462884›Full record

ArticlePlanta2013

Polymorphism of TaSAP1-A1 and its association with agronomic traits in wheat.

Jianzhong Chang, Jianan Zhang, Xinguo Mao, Ang Li, Jizeng Jia, Ruilian Jing

Abstract read
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In one paragraph

Article in Planta, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Molecular Characterization and Marker Development of theInternational journal of molecular sciences · 2023
    Article
  5. Article
  6. Fine mapping and characterization of a major QTL for grain weight on wheat chromosome arm 5DL.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022
    Article
  7. Wheat glutamine synthetase TaGSr-4B is a candidate gene for a QTL of thousand grain weight on chromosome 4B.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022
    Article
  8. A superior allele of the wheat gene TaGL3.3-5B, selected in the breeding process, contributes to seed size and weight.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022
    Article
  9. Article
  10. Article
  11. Expression of Specific Alleles of Zinc-Finger Transcription Factors,International journal of molecular sciences · 2021
    Article
  12. Article
  13. Cloning and Characterization ofFrontiers in plant science · 2021
    Article
  14. Article
  15. Molecular Mapping and Genomics of Grain Yield in Durum Wheat: A Review.International journal of molecular sciences · 2020
    Review
  16. Genetic architecture underpinning yield component traits in wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020
    Review
  17. Appraisal of wheat genomics for gene discovery and breeding applications: a special emphasis on advances in Asia.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020
    Review
  18. Genetics of yield, abiotic stress tolerance and biofortification in wheat (Triticum aestivum L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020
    Review
  19. Article
  20. A wheat protein kinase gene TaSnRK2.9-5A associated with yield contributing traits.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Jianzhong ChangNational Key Facility for Crop Gene Resources and Genetic Improvement, Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing 100081, China. cjzyfx@163.com
Jianan Zhang
Xinguo Mao
Ang Li
Jizeng Jia
Ruilian Jing

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

TaSAP1, a member of the stress association protein (SAP) gene family from wheat, is involved in response to several abiotic stresses, including drought, salt and cold. In this study, TaSAP1-A1, a TaSAP1 member on chromosome 7A, and its flanking sequences were isolated. Polymorphism analysis indicated that the average nucleotide diversity (π) of the whole region was 0.00296. The highest nucleotide diversity occurred in the promoter region (π = 0.00631) and no polymorphism was identified in the coding region. Three markers T7AM5, T7AM2606 and T7AM39 located in the promoter region, were developed from sequence variations (InDel5-1810, SNP-2606 and InDel39-1637). Six haplotypes were identified among 300 accessions based on the three markers. TaSAP1-A1 was located on chromosome 7A using marker T7AM39 and was flanked by markers Xwmc530 and Xbarc174. QTL for yield-related traits, including 1,000-grain weight, number of grains per spike and grain yield, were located in the same region. In marker- and haplotype-trait association analyses, TaSAP1-A1 was significantly associated with 1,000-grain weight, number of grains per spike, spike length, peduncle length and total number of spikelets per spike in multiple environments. These results provide useful information for marker-assisted selection for yield-related traits under well-watered and drought-stressed conditions.

Indexed as

AgricultureGenetic Association StudiesPolymorphism, GeneticQuantitative Trait, HeritableBase SequenceChromosome MappingChromosomes, PlantGenetic MarkersHaplotypesLinkage DisequilibriumNucleotidesPhenotypePlant ProteinsPolymerase Chain ReactionPopulation DynamicsSequence Analysis, DNAGenetic MarkersNucleotidesPlant Proteins

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.