ArticlePloS one2013
The complete chloroplast genome sequence of the medicinal plant Salvia miltiorrhiza.
Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 212 papers.
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212 citing papers in PubMed, 403 citations in OpenAlex.
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- Complete Chloroplast genome of Mentha aquatica reveals hypervariable regions and resolves phylogenetic position within the genus Mentha.Molecular biology reports · 2025Article
- Comparative Analysis of the Complete Chloroplast Genomes of EightCurrent issues in molecular biology · 2025Article
- Decoding the chloroplast genomes of five Iranian Salvia species: insights into genomic structure, phylogenetic relationships, and molecular marker development.BMC genomics · 2025Article
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- Comprehensive Chloroplast Genomic Insights intoPlants (Basel, Switzerland) · 2025Article
- Analysis of microbial community composition and diversity in the rhizosphere of Salvia miltiorrhiza at different growth stages.International microbiology : the official journal of the Spanish Society for Microbiology · 2025Article
- Comparative chloroplast genomes and phylogenetic analysis of theFrontiers in plant science · 2025Article
- Identification and management of a novel Danshen leaf anthracnose caused byFrontiers in plant science · 2025Article
- New plastome from an introducedMitochondrial DNA. Part B, Resources · 2025Article
- Complete chloroplast genome characterization of three Plagiomnium species and the phylogeny of family Mniaceae.Genetica · 2024Article
- Deciphering the complete chloroplast genome sequence ofHeliyon · 2024Article
- Assembly and comparative analysis of the complete mitochondrial genome of Fritillaria ussuriensis Maxim. (Liliales: Liliaceae), an endangered medicinal plant.BMC genomics · 2024Article
152 more citing papers are in PubMed but not listed here.
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13 authors at 2 institutions in 1 country.
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No grant is acknowledged in the PubMed record.
Abstract
Salvia miltiorrhiza is an important medicinal plant with great economic and medicinal value. The complete chloroplast (cp) genome sequence of Salvia miltiorrhiza, the first sequenced member of the Lamiaceae family, is reported here. The genome is 151,328 bp in length and exhibits a typical quadripartite structure of the large (LSC, 82,695 bp) and small (SSC, 17,555 bp) single-copy regions, separated by a pair of inverted repeats (IRs, 25,539 bp). It contains 114 unique genes, including 80 protein-coding genes, 30 tRNAs and four rRNAs. The genome structure, gene order, GC content and codon usage are similar to the typical angiosperm cp genomes. Four forward, three inverted and seven tandem repeats were detected in the Salvia miltiorrhiza cp genome. Simple sequence repeat (SSR) analysis among the 30 asterid cp genomes revealed that most SSRs are AT-rich, which contribute to the overall AT richness of these cp genomes. Additionally, fewer SSRs are distributed in the protein-coding sequences compared to the non-coding regions, indicating an uneven distribution of SSRs within the cp genomes. Entire cp genome comparison of Salvia miltiorrhiza and three other Lamiales cp genomes showed a high degree of sequence similarity and a relatively high divergence of intergenic spacers. Sequence divergence analysis discovered the ten most divergent and ten most conserved genes as well as their length variation, which will be helpful for phylogenetic studies in asterids. Our analysis also supports that both regional and functional constraints affect gene sequence evolution. Further, phylogenetic analysis demonstrated a sister relationship between Salvia miltiorrhiza and Sesamum indicum. The complete cp genome sequence of Salvia miltiorrhiza reported in this paper will facilitate population, phylogenetic and cp genetic engineering studies of this medicinal plant.
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