Evidence map›Paper›PMID 23460678›Full record

ArticleThe Journal of cell biology2013

Notochord vacuoles are lysosome-related organelles that function in axis and spine morphogenesis.

Kathryn Ellis, Jennifer Bagwell, Michel Bagnat

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of cell biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 107 papers.

0numbers the graph read from it
0cells of the map it votes in
107citing papers in PubMed
4.9field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

107 citing papers in PubMed, 176 citations in OpenAlex.

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  6. A novel transgenic reporter of extracellular acidification in zebrafish elucidates skeletal muscle T-tubule pH regulation.Developmental dynamics : an official publication of the American Association of Anatomists · 2025
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  19. iScience · 2024
    Article
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47 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 1 country.

Kathryn EllisDepartment of Cell Biology, Duke University Medical Center, Durham, NC 27710, USA.
Jennifer Bagwell
Michel Bagnat
Duke Medical Center · USDuke University · USDuke University Hospital · US

Funding

Training Program in Developmental & Stem Cell BiologyT32HD040372 · NICHD · DUKE UNIVERSITY · PI Terry H Lechler · 2001 to 2026
$8.9M
Discovering New Regulators of CFTR and Fluid Secretion in ZebrafishDP2OD006486 · OD · DUKE UNIVERSITY · PI BAGNAT, MICHEL · 2009 to 2009
$2.3M
NICHD NIH HHS T32 HD040372NIH HHS 1DP2OD006486NIH HHS DP2 OD006486
6 · The paper itself

Abstract

The notochord plays critical structural and signaling roles during vertebrate development. At the center of the vertebrate notochord is a large fluid-filled organelle, the notochord vacuole. Although these highly conserved intracellular structures have been described for decades, little is known about the molecular mechanisms involved in their biogenesis and maintenance. Here we show that zebrafish notochord vacuoles are specialized lysosome-related organelles whose formation and maintenance requires late endosomal trafficking regulated by the vacuole-specific Rab32a and H(+)-ATPase-dependent acidification. We establish that notochord vacuoles are required for body axis elongation during embryonic development and identify a novel role in spine morphogenesis. Thus, the vertebrate notochord plays important structural roles beyond early development.

Indexed as

AnimalsAnimals, Genetically ModifiedAxis, Cervical VertebraCell MovementEndocytosisEndosomesGene Expression Regulation, DevelopmentalHEK293 CellsHumansHydrogen-Ion ConcentrationLysosomesMicroscopy, ConfocalMorphogenesisNotochordProtein TransportProton-Translocating ATPasesProton-Translocating ATPasesrab GTP-Binding ProteinsRecombinant Fusion ProteinsZebrafish Proteins

Identifiers

PMID23460678
PMCPMC3587825
OpenAlexW1969644508

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.