Evidence map›Paper›PMID 23459139›Full record

ArticlePLoS genetics2013

Tysnd1 deficiency in mice interferes with the peroxisomal localization of PTS2 enzymes, causing lipid metabolic abnormalities and male infertility.

Yumi Mizuno, Yuichi Ninomiya, Yutaka Nakachi, Mioko Iseki, Hiroyasu Iwasa, Masumi Akita, Tohru Tsukui, Nobuyuki Shimozawa, Chizuru Ito, Kiyotaka Toshimori and 17 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed, 1 pooled it
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 1 synthesis or guideline pooled it, 37 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Peroxisome Deficiency in Cochlear Hair Cells Causes Hearing Loss by Deregulating BK Channels.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2023
    Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Sperm Lipid Markers of Male Fertility in Mammals.International journal of molecular sciences · 2021
    Review
  11. Article
  12. Article
  13. Mammalian Homologue NME3 of DYNAMO1 Regulates Peroxisome Division.International journal of molecular sciences · 2020
    Article
  14. Article
  15. Article
  16. Peroxisomal Metabolite and Cofactor Transport in Humans.Frontiers in cell and developmental biology · 2020
    Review
  17. Article
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors at 12 institutions in 3 countries.

Yumi MizunoDivision of Functional Genomics and Systems Medicine, Research Center for Genomic Medicine, Saitama Medical University, Hidaka-shi, Saitama, Japan.
Yuichi Ninomiya
Yutaka Nakachi
Mioko Iseki
Hiroyasu Iwasa
Masumi Akita
Tohru Tsukui
Nobuyuki Shimozawa
Chizuru Ito
Kiyotaka Toshimori
Megumi Nishimukai
Hiroshi Hara
Ryouta Maeba
Tomoki Okazaki
Ali Nasser Ali Alodaib
Mohammed Al Amoudi
Minnie Jacob
Fowzan S Alkuraya
Yasushi Horai
Mitsuhiro Watanabe
Hiromi Motegi
Shigeharu Wakana
Tetsuo Noda
Igor V Kurochkin
Yosuke Mizuno
Christian Schönbach
Yasushi Okazaki
Saitama Medical University · JPKing Faisal Specialist Hospital & Research Centre · SAChiba University · JPHokkaido University · JPKeio University · JPRIKEN BioResource Research Center · JPTeikyo University · JPBioinformatics Institute · SGGifu University · JPJapanese Foundation For Cancer Research · JPKing Saud University · SANanyang Technological University · SG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Peroxisomes are subcellular organelles involved in lipid metabolic processes, including those of very-long-chain fatty acids and branched-chain fatty acids, among others. Peroxisome matrix proteins are synthesized in the cytoplasm. Targeting signals (PTS or peroxisomal targeting signal) at the C-terminus (PTS1) or N-terminus (PTS2) of peroxisomal matrix proteins mediate their import into the organelle. In the case of PTS2-containing proteins, the PTS2 signal is cleaved from the protein when transported into peroxisomes. The functional mechanism of PTS2 processing, however, is poorly understood. Previously we identified Tysnd1 (Trypsin domain containing 1) and biochemically characterized it as a peroxisomal cysteine endopeptidase that directly processes PTS2-containing prethiolase Acaa1 and PTS1-containing Acox1, Hsd17b4, and ScpX. The latter three enzymes are crucial components of the very-long-chain fatty acids β-oxidation pathway. To clarify the in vivo functions and physiological role of Tysnd1, we analyzed the phenotype of Tysnd1(-/-) mice. Male Tysnd1(-/-) mice are infertile, and the epididymal sperms lack the acrosomal cap. These phenotypic features are most likely the result of changes in the molecular species composition of choline and ethanolamine plasmalogens. Tysnd1(-/-) mice also developed liver dysfunctions when the phytanic acid precursor phytol was orally administered. Phyh and Agps are known PTS2-containing proteins, but were identified as novel Tysnd1 substrates. Loss of Tysnd1 interferes with the peroxisomal localization of Acaa1, Phyh, and Agps, which might cause the mild Zellweger syndrome spectrum-resembling phenotypes. Our data established that peroxisomal processing protease Tysnd1 is necessary to mediate the physiological functions of PTS2-containing substrates.

Indexed as

Receptors, Cytoplasmic and NuclearAmino Acid SequenceAnimalsBiological TransportCysteine EndopeptidasesHumansInfertility, MaleLipid MetabolismMaleMiceOxidation-ReductionPeroxisomal Targeting Signal 2 ReceptorPeroxisomesProtein Sorting SignalsSerine EndopeptidasesSerine ProteasesCysteine EndopeptidasesPeroxisomal Targeting Signal 2 ReceptorProtein Sorting SignalsReceptors, Cytoplasmic and NuclearSerine EndopeptidasesSerine ProteasesTysnd1 protein, humanTysnd1 protein, mouse

Identifiers

PMID23459139
PMCPMC3573110
OpenAlexW2120111943

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.