Evidence map›Paper›PMID 23459127›Full record

ArticleBiochimica et biophysica acta2013

An engineered heme-copper center in myoglobin: CO migration and binding.

Karin Nienhaus, John S Olson, G Ulrich Nienhaus

Abstract read
In one paragraph

Article in Biochimica et biophysica acta, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Karin NienhausInstitute of Applied Physics and Center for Functional Nanostructures, Karlsruhe Institute of Technology, Karlsruhe, Germany.
John S Olson
G Ulrich Nienhaus

Funding

Recombinant HbAp Production for In Vivo Toxicity StudiesP01HL110900 · NHLBI · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI FRIEDMAN, JOEL M · 2012 to 2016
$10.6M
Function Properties of Hemoglobins and MyoglobinsR01GM035649 · NIGMS · RICE UNIVERSITY · PI OLSON, JOHN S. · 1985 to 2010
$3.3M
DESIGN OF HEME-PROTEIN BASED BLOOD SUBSTITUTESR01HL047020 · NHLBI · RICE UNIVERSITY · PI OLSON, JOHN S. · 1991 to 2010
$2.9M
NHLBI NIH HHS HL110900NHLBI NIH HHS P01 HL110900NHLBI NIH HHS R01 HL047020NIGMS NIH HHS GM35649NIGMS NIH HHS R01 GM035649
6 · The paper itself

Abstract

We have investigated CO migration and binding in CuBMb, a copper-binding myoglobin double mutant (L29H-F43H), by using Fourier transform infrared spectroscopy and flash photolysis over a wide temperature range. This mutant was originally engineered with the aim to mimic the catalytic site of heme-copper oxidases. Comparison of the wild-type protein Mb and CuBMb shows that the copper ion in the distal pocket gives rise to significant effects on ligand binding to the heme iron. In Mb and copper-free CuBMb, primary and secondary ligand docking sites are accessible upon photodissociation. In copper-bound CuBMb, ligands do not migrate to secondary docking sites but rather coordinate to the copper ion. Ligands entering the heme pocket from the outside normally would not be captured efficiently by the tight distal pocket housing the two additional large imidazole rings. Binding at the Cu ion, however, ensures efficient trapping in CuBMb. The Cu ion also restricts the motions of the His64 side chain, which is the entry/exit door for ligand movement into the active site, and this restriction results in enhanced geminate and slow bimolecular CO rebinding. These results support current mechanistic views of ligand binding in hemoglobins and the role of the CuB in the active of heme-copper oxidases. This article is part of a Special Issue entitled: Oxygen Binding and Sensing Proteins.

Indexed as

AnimalsBinding SitesCarbon MonoxideCatalytic DomainCopperHemeKineticsMaleModels, MolecularMutationMyoglobinPhotolysisProtein BindingSpectroscopy, Fourier Transform InfraredTemperatureWhalesCarbon MonoxideCopperHemeMyoglobincopper-binding Mb mutant L29H–F43HCu(B)MbFourier transform infraredFourier transform infrared spectroscopyFTIRHCOheme–copper oxidaseHeme proteinLigand bindingLigand migrationMbmyoglobinPhotolysis difference spectroscopyTDStemperature derivative spectroscopyTemperature derivative spectroscopy

Identifiers

PMID23459127
PMCPMC3687040

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.