Evidence map›Paper›PMID 23457550›Full record

ArticlePloS one2013

The epitope of monoclonal antibodies blocking erythrocyte invasion by Plasmodium falciparum map to the dimerization and receptor glycan binding sites of EBA-175.

Xavier Ambroggio, Lubin Jiang, Joan Aebig, Harold Obiakor, Jan Lukszo, David L Narum

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
4.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Low-Complexity Repetitive Epitopes ofFrontiers in immunology · 2020
    Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Biological roles of glycans.Glycobiology · 2017
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Xavier AmbroggioBioinformatics and Computational Biosciences Branch, Office of Cyber Infrastructure and Computational Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, United States of America.
Lubin Jiang
Joan Aebig
Harold Obiakor
Jan Lukszo
David L Narum
National Institutes of Health · USInstitut Pasteur of Shanghai · CNNational Institute of Allergy and Infectious Diseases · US

Funding

PLASMODIUM FALCIPARUM MALARIA INVASION LIGAND AS A VACCIR43AI036758 · NIAID · ENTREMED, INC. · PI SIM, B. KIM LEE · 1994 to 1994
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FALCIPARUM MALARIA INVASION LIGAND VACCINE NER44AI036758 · NIAID · ENTREMED, INC. · PI SIM, B. KIM LEE · 1997 to 1999
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Intramural NIH HHSNIAID NIH HHS AI36758
6 · The paper itself

Abstract

The malaria parasite, Plasmodium falciparum, and related parasites use a variety of proteins with Duffy-Binding Like (DBL) domains to bind glycoproteins on the surface of host cells. Among these proteins, the 175 kDa erythrocyte binding antigen, EBA-175, specifically binds to glycophorin A on the surface of human erythrocytes during the process of merozoite invasion. The domain responsible for glycophorin A binding was identified as region II (RII) which contains two DBL domains, F1 and F2. The crystal structure of this region revealed a dimer that is presumed to represent the glycophorin A binding conformation as sialic acid binding sites and large cavities are observed at the dimer interface. The dimer interface is largely composed of two loops from within each monomer, identified as the F1 and F2 β-fingers that contact depressions in the opposing monomers in a similar manner. Previous studies have identified a panel of five monoclonal antibodies (mAbs) termed R215 to R218 and R256 that bind to RII and inhibit invasion of erythrocytes to varying extents. In this study, we predict the F2 β-finger region as the conformational epitope for mAbs, R215, R217, and R256, and confirm binding for the most effective blocking mAb R217 and R215 to a synthetic peptide mimic of the F2 β-finger. Localization of the epitope to the dimerization and glycan binding sites of EBA-175 RII and site-directed mutagenesis within the predicted epitope are consistent with R215 and R217 blocking erythrocyte invasion by Plasmodium falciparum by preventing formation of the EBA-175- glycophorin A complex.

Indexed as

Epitope MappingProtein MultimerizationAntibodies, MonoclonalAntibody SpecificityAntigens, ProtozoanBinding SitesComputational BiologyErythrocytesGlycophorinsHumansModels, MolecularPeptide FragmentsPeptide LibraryPlasmodium falciparumPolysaccharidesProtein Structure, QuaternaryAntibodies, MonoclonalAntigens, Protozoanerythrocyte-binding antigen 175, PlasmodiumGlycophorinsPeptide FragmentsPeptide LibraryPolysaccharidesProtozoan Proteins

Identifiers

PMID23457550
PMCPMC3574135
OpenAlexW2004646638

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.