Evidence map›Paper›PMID 23457298›Full record

ArticleThe Journal of biological chemistry2013

Respective contribution of mitochondrial superoxide and pH to mitochondria-targeted circularly permuted yellow fluorescent protein (mt-cpYFP) flash activity.

Lan Wei-LaPierre, Guohua Gong, Brent J Gerstner, Sylvie Ducreux, David I Yule, Sandrine Pouvreau, Xianhua Wang, Shey-Shing Sheu, Heping Cheng, Robert T Dirksen and 1 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
5.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 75 citations in OpenAlex.

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  9. Mitochondria as central hubs in synaptic modulation.Cellular and molecular life sciences : CMLS · 2023
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  15. Physiological CaFrontiers in physiology · 2020
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  16. Review
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  20. Dysregulated mitochondrial CaArchives of biochemistry and biophysics · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 7 institutions in 3 countries.

Lan Wei-LaPierreDepartment of Pharmacology and Physiology, University of Rochester Medical Center, Rochester, New York 14642, USA.
Guohua Gong
Brent J Gerstner
Sylvie Ducreux
David I Yule
Sandrine Pouvreau
Xianhua Wang
Shey-Shing Sheu
Heping Cheng
Robert T Dirksen
Wang Wang
University of Rochester Medical Center · USUniversity of Washington · USCenter for Life Sciences · CNLaboratoire de Biologie et Modélisation de la Cellule · FRPeking University · CNThomas Jefferson University · USUniversité Claude Bernard Lyon 1 · FR

Funding

NAD+/NADH ratio, protein acetylation and mitochondrial functionR01HL110349 · NHLBI · UNIVERSITY OF WASHINGTON · PI TIAN, RONG · 2011 to 2020
$5.7M
Ca2+ and ROS Crosstalk Signaling in Cardiac MitochondriaR01HL093671 · NHLBI · UNIVERSITY OF ROCHESTER · PI SHEU, SHEY-SHING · 2010 to 2023
$5.1M
Control of Calcium Movements in MuscleR01AR044657 · NIAMS · UNIVERSITY OF ROCHESTER · PI DIRKSEN, ROBERT T · 2002 to 2011
$3.3M
Mitochondrial Respiration and Superoxide Production in Healthy and Failing HeartR01HL114760 · NHLBI · UNIVERSITY OF WASHINGTON · PI WANG, WANG · 2012 to 2016
$2.1M
CONTROL OF CALCIUM MOVEMENTS IN MUSCLER29AR044657 · NIAMS · UNIVERSITY OF ROCHESTER · PI DIRKSEN, ROBERT T · 1997 to 2001
$215k
NHLBI NIH HHS HL093671NHLBI NIH HHS HL114760NHLBI NIH HHS R01 HL093671NHLBI NIH HHS R01 HL110349NHLBI NIH HHS R01 HL114760NIAMS NIH HHS AR44657NIAMS NIH HHS R01 AR044657NIAMS NIH HHS R29 AR044657
6 · The paper itself

Abstract

Superoxide flashes are transient bursts of superoxide production within the mitochondrial matrix that are detected using the superoxide-sensitive biosensor, mitochondria-targeted circularly permuted YFP (mt-cpYFP). However, due to the pH sensitivity of mt-cpYFP, flashes were suggested to reflect transient events of mitochondrial alkalinization. Here, we simultaneously monitored flashes with mt-cpYFP and mitochondrial pH with carboxy-SNARF-1. In intact cardiac myocytes and purified skeletal muscle mitochondria, robust mt-cpYFP flashes were accompanied by only a modest increase in SNARF-1 ratio (corresponding to a pH increase of <0.1), indicating that matrix alkalinization is minimal during an mt-cpYFP flash. Individual flashes were also accompanied by stepwise increases of MitoSOX signal and decreases of NADH autofluorescence, supporting the superoxide origin of mt-cpYFP flashes. Transient matrix alkalinization induced by NH4Cl only minimally influenced flash frequency and failed to alter flash amplitude. However, matrix acidification modulated superoxide flash frequency in a bimodal manner. Low concentrations of nigericin (< 100 nM) that resulted in a mild dissipation of the mitochondrial pH gradient increased flash frequency, whereas a maximal concentration of nigericin (5 μm) collapsed the pH gradient and abolished flash activity. These results indicate that mt-cpYFP flash events reflect a burst in electron transport chain-dependent superoxide production that is coincident with a modest increase in matrix pH. Furthermore, flash activity depends strongly on a combination of mitochondrial oxidation and pH gradient.

Indexed as

Ammonium ChlorideAnimalsBacterial ProteinsBenzopyransCells, CulturedElectron Transport Chain Complex ProteinsFluorescent DyesHydrogen-Ion ConcentrationIonophoresLuminescent ProteinsMitochondria, HeartMyocytes, CardiacNaphtholsNigericinOxidation-ReductionProton-Motive ForceAmmonium ChlorideBacterial ProteinsBenzopyransElectron Transport Chain Complex ProteinsFluorescent DyesIonophoresLuminescent ProteinsNaphtholsNigericinRhodaminesseminaphthorhodaminefluorideSuperoxidesyellow fluorescent protein, Bacteria

Identifiers

PMID23457298
PMCPMC3624438
OpenAlexW2004351789

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.