ArticleGenetics2013
Identifying loci under selection against gene flow in isolation-with-migration models.
Article in Genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.
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Who cites it
23 citing papers in PubMed, 63 citations in OpenAlex.
- Demographically explicit scans for barriers to gene flow using gIMble.PLoS genetics · 2023Article
- The role of recombination landscape in species hybridisation and speciation.Frontiers in plant science · 2023Review
- Approximate Bayesian Computation Untangles Signatures of Contemporary and Historical Hybridization between Two Endangered Species.Molecular biology and evolution · 2022Article
- Identifying loci under selection via explicit demographic models.Molecular ecology resources · 2021Article
- Comparative genomics approach to evolutionary process connectivity.Evolutionary applications · 2020Article
- Demographic history and genomics of local adaptation in blue tit populations.Evolutionary applications · 2020Article
- Twin introductions by independent invader mussel lineages are both associated with recent admixture with a native congener in Australia.Evolutionary applications · 2020Article
- Hybridization patterns between two marine snails,Ecology and evolution · 2020Article
- Recent Secondary Contacts, Linked Selection, and Variable Recombination Rates Shape Genomic Diversity in the Model Species Anolis carolinensis.Genome biology and evolution · 2019Article
- Methods for Estimating Demography and Detecting Between-Locus Differences in the Effective Population Size and Mutation Rate.Molecular biology and evolution · 2019Article
- The origin and remolding of genomic islands of differentiation in the European sea bass.Nature communications · 2018Article
- Article
- Modeling the Multiple Facets of Speciation-with-Gene-Flow toward Inferring the Divergence History of Lake Whitefish Species Pairs (Coregonus clupeaformis).Genome biology and evolution · 2017Article
- HacDivSel: Two new methods (haplotype-based and outlier-based) for the detection of divergent selection in pairs of populations.PloS one · 2017Article
- Shedding Light on the Grey Zone of Speciation along a Continuum of Genomic Divergence.PLoS biology · 2016Article
- Powerful methods for detecting introgressed regions from population genomic data.Molecular ecology · 2016Article
- A genomic perspective on hybridization and speciation.Molecular ecology · 2016Review
- Genome-wide tests for introgression between cactophilic Drosophila implicate a role of inversions during speciation.Evolution; international journal of organic evolution · 2015Article
- ABC inference of multi-population divergence with admixture from unphased population genomic data.Molecular ecology · 2014Article
- Selection and demographic history shape the molecular evolution of the gamete compatibility protein bindin in Pisaster sea stars.Ecology and evolution · 2014Article
Corrections and comments
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Authors and funding
4 authors at 2 institutions in 2 countries.
Funding
Abstract
When divergence occurs in the presence of gene flow, there can arise an interesting dynamic in which selection against gene flow, at sites associated with population-specific adaptations or genetic incompatibilities, can cause net gene flow to vary across the genome. Loci linked to sites under selection may experience reduced gene flow and may experience genetic bottlenecks by the action of nearby selective sweeps. Data from histories such as these may be poorly fitted by conventional neutral model approaches to demographic inference, which treat all loci as equally subject to forces of genetic drift and gene flow. To allow for demographic inference in the face of such histories, as well as the identification of loci affected by selection, we developed an isolation-with-migration model that explicitly provides for variation among genomic regions in migration rates and/or rates of genetic drift. The method allows for loci to fall into any of multiple groups, each characterized by a different set of parameters, thus relaxing the assumption that all loci share the same demography. By grouping loci, the method can be applied to data with multiple loci and still have tractable dimensionality and statistical power. We studied the performance of the method using simulated data, and we applied the method to study the divergence of two subspecies of European rabbits (Oryctolagus cuniculus).
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.