Evidence map›Paper›PMID 23456720›Full record

ArticleJournal of microbiology (Seoul, Korea)2013

Isolation and characterization of a mycovirus in Lentinula edodes.

Hyo-Kyoung Won, So-Jung Park, Dong-Kyu Kim, Myeung Ju Shin, Nari Kim, Song-Hee Lee, Young-Chul Kwon, Han Kyu Ko, Hyeon-Su Ro, Hyun-Sook Lee

Abstract read
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In one paragraph

Article in Journal of microbiology (Seoul, Korea), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.2field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 37 citations in OpenAlex.

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  12. Multiplex Detection ofCurrent issues in molecular biology · 2022
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  15. Viruses infecting macrofungi.Virusdisease · 2018
    Review
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Hyo-Kyoung WonDepartment of Microbiology and Research Institute of Life Sciences, Gyeongsang National University, Jinju 660-701, Republic of Korea.
So-Jung Park
Dong-Kyu Kim
Myeung Ju Shin
Nari Kim
Song-Hee Lee
Young-Chul Kwon
Han Kyu Ko
Hyeon-Su Ro
Hyun-Sook Lee
Gyeongsang National University · KRForest Research Institute · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A mycovirus was isolated from an edible mushroom, Lentinula edodes, that was suffering from a severe epidemic. Fractionation of the diseased cell extract by isopycnic centrifugation with 50% CsCl revealed that the diseased mushroom was infected by Lentinula edodes spherical virus (LeSV), a new spherical virus with a diameter of 55 nm. The particle of LeSV encapsidated the 12 kb RNA genome by a 120 kDa coat protein. BLAST analysis of the partially sequenced LeSV genome showed 95% sequence identity with a putative RNA-dependent RNA polymerase (RdRp) gene of the mycovirus HKB, which was previously reported as being a double-stranded RNA (dsRNA) element. In contrast to HKB, the RNA genome in LeSV is encapsidated by the 120 kDa coat protein. To confirm that the LeSV coat protein is encoded by the viral genome, the N-terminal amino acid sequence of the coat protein was determined. The resulting N-terminal amino acid sequence, N-SALDVAPVVPELYFXXLEV-C, was found to be located in the middle of the HKB ORF1, suggesting that the LeSV coat protein was indeed encoded by the virus. To detect LeSV in L. edodes, a primer set targeting the RdRp gene was designed based on the partial sequence of the LeSV genome. RT-PCR analysis showed that 56 of the 84 commercially available dikaryotic cultivars carry LeSV. The transmission pattern of the virus was determined by analysing basidiospores from LeSV-infected and LeSV-free fruiting bodies. Nine out of 10 basidiospores from the LeSV-infected cultivars contained the virus while the spores from the LeSV-free parent were free of LeSV, suggesting that vertical transmission is the primary mode of LeSV propagation.

Indexed as

Amino Acid SequenceCapsid ProteinsGenome, ViralMicroscopy, Electron, TransmissionMolecular Sequence DataRNA-Dependent RNA PolymeraseRNA, ViralRNA VirusesSequence AlignmentSequence Analysis, DNAShiitake MushroomsCapsid ProteinsRNA-Dependent RNA PolymeraseRNA, Viral

Identifiers

PMID23456720
OpenAlexW2062446194

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.