Evidence map›Paper›PMID 23456248›Full record

ArticlePlant molecular biology2013

OsSNDP1, a Sec14-nodulin domain-containing protein, plays a critical role in root hair elongation in rice.

Jin Huang, Chul Min Kim, Yuan-hu Xuan, Soon Ju Park, Hai Long Piao, Byoung Il Je, Jingmiao Liu, Tae Ho Kim, Bo-Kyeong Kim, Chang-Deok Han

Abstract read
PubMed Publisher
In one paragraph

Article in Plant molecular biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
6.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 70 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Early exposure to phosphorus starvation induces genetically determined responses in Sorghum bicolor roots.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024
    Article
  5. Article
  6. Article
  7. Article
  8. OsUGE1 is directly targeted by OsGRF6 to regulate root hair length in rice.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023
    Article
  9. Article
  10. Review
  11. Plants (Basel, Switzerland) · 2022
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Coordination of mRice (New York, N.Y.) · 2021
    Article
  18. Proofing Direct-Seeded Rice with Better Root Plasticity and Architecture.International journal of molecular sciences · 2021
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Jin HuangDivision of Applied Life Science (BK21 Program), Plant Molecular Biology and Biotechnology Research Center (PMBBRC), Gyeongsang National University, Jinju 660-701, Korea.
Chul Min Kim
Yuan-hu Xuan
Soon Ju Park
Hai Long Piao
Byoung Il Je
Jingmiao Liu
Tae Ho Kim
Bo-Kyeong Kim
Chang-Deok Han
Gyeongsang National University · KRNational Academy of Agricultural Science · KRUniversity of Oxford · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Rice is cultivated in water-logged paddy lands. Thus, rice root hairs on the epidermal layers are exposed to a different redox status of nitrogen species, organic acids, and metal ions than root hairs growing in drained soil. To identify genes that play an important role in root hair growth, a forward genetics approach was used to screen for short-root-hair mutants. A short-root-hair mutant was identified and isolated by using map-based cloning and sequencing. The mutation arose from a single amino acid substitution of OsSNDP1 (Oryza sativa Sec14-nodulin domain protein), which shows high sequence homology with Arabidopsis COW1/AtSFH1 and encodes a phosphatidylinositol transfer protein (PITP). By performing complementation assays with Atsfh1 mutants, we demonstrated that OsSNDP1 is involved in growth of root hairs. Cryo-scanning electron microscopy was utilized to further characterize the effect of the Ossndp1 mutation on root hair morphology. Aberrant morphogenesis was detected in root hair elongation and maturation zones. Many root hairs were branched and showed irregular shapes due to bulged nodes. Many epidermal cells also produced dome-shaped root hairs, which indicated that root hair elongation ceased at an early stage. These studies showed that PITP-mediated phospholipid signaling and metabolism is critical for root hair elongation in rice.

Indexed as

Amino Acid SequenceArabidopsisBase SequenceChi-Square DistributionChromosome SegregationCloning, MolecularGene Expression ProfilingGene Expression Regulation, PlantGenetic Complementation TestMembrane ProteinsMolecular Sequence DataMutationOryzaPhenotypePlant ProteinsPlant RootsMembrane ProteinsnodulinPlant ProteinsRNA, Messenger

Identifiers

PMID23456248
OpenAlexW2014480746

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.