Evidence map›Paper›PMID 23455637›Full record

ArticleNature genetics2013

A variant in FTO shows association with melanoma risk not due to BMI.

Mark M Iles, Matthew H Law, Simon N Stacey, Jiali Han, Shenying Fang, Ruth Pfeiffer, Mark Harland, Stuart Macgregor, John C Taylor, Katja K Aben and 82 more

Registry-linked trialAbstract read
In one paragraph

Article in Nature genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT00339222 (Family Study of Melanoma in Italy), which is not on this map. Cited by 82 papers, 5 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
82citing papers in PubMed, 5 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT00339222 completednot on this map

Family Study of Melanoma in Italy

TypeobservationalSponsorNational Cancer Institute (NCI)Ran2001 to 2020Enrolled1,708ConditionsMelanoma, Dysplastic Nevi, Melanocytic Nevi
3 · Its place in the literature

Who cites it

82 citing papers in PubMed, 5 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Pooled it
  5. Pooled it
  6. Article
  7. Review
  8. Article
  9. Article
  10. Review
  11. Review
  12. Review
  13. FTO in health and disease.Frontiers in cell and developmental biology · 2024
    Review
  14. The crucial roles of mGenes & diseases · 2023
    Review
  15. Review
  16. Screening of Exons 4-9 Polymorphisms ofArchives of Razi Institute · 2023
    Article
  17. Article
  18. Article
  19. Cell cycle (Georgetown, Tex.) · 2022
    Article
  20. Review

22 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

92 authors.

Mark M IlesSection of Epidemiology and Biostatistics, Leeds Institute of Molecular Medicine, Leeds Cancer Research UK Centre, St. James's University Hospital, Leeds, UK. m.m.iles@leeds.ac.uk
Matthew H Law
Simon N Stacey
Jiali Han
Shenying Fang
Ruth Pfeiffer
Mark Harland
Stuart Macgregor
John C Taylor
Katja K Aben
Lars A Akslen
Marie-Françoise Avril
Esther Azizi
Bert Bakker
Kristrun R Benediktsdottir
Wilma Bergman
Giovanna Bianchi Scarrà
Kevin M Brown
Donato Calista
Valérie Chaudru
Maria Concetta Fargnoli
Anne E Cust
Florence Demenais
Anne C de Waal
Tadeusz Dębniak
David E Elder
Eitan Friedman
Pilar Galan
Paola Ghiorzo
Elizabeth M Gillanders
Alisa M Goldstein
Nelleke A Gruis
Johan Hansson
Per Helsing
Marko Hočevar
Veronica Höiom
John L Hopper
Christian Ingvar
Marjolein Janssen
Mark A Jenkins
Peter A Kanetsky
Lambertus A Kiemeney
Julie Lang
G Mark Lathrop
Sancy Leachman
Jeffrey E Lee
Jan Lubiński
Rona M Mackie
Graham J Mann
Nicholas G Martin
Jose I Mayordomo
Anders Molven
Suzanne Mulder
Eduardo Nagore
Srdjan Novaković
Ichiro Okamoto
Jon H Olafsson
Håkan Olsson
Hubert Pehamberger
Ketty Peris
Maria Pilar Grasa
Dolores Planelles
Susana Puig
Joan Anton Puig-Butille
Juliette Randerson-Moor
Celia Requena
Licia Rivoltini
Monica Rodolfo
Mario Santinami
Bardur Sigurgeirsson
Helen Snowden
Fengju Song
Patrick Sulem
Kristin Thorisdottir
Rainer Tuominen
Patricia Van Belle
Nienke van der Stoep
Michelle M van Rossum
Qingyi Wei
Judith Wendt
Diana Zelenika
Mingfeng Zhang
Maria Teresa Landi
Gudmar Thorleifsson
D Timothy Bishop
Christopher I Amos
Nicholas K Hayward
Kari Stefansson
Julia A Newton Bishop
Jennifer H Barrett
GenoMEL Consortium
Q-MEGA and AMFS Investigators

Funding

UNIVERSITY OF PENNSYLVANIA CAN CTR SUPPORT GRANTP30CA016520 · NCI · UNIVERSITY OF PENNSYLVANIA · PI SHELLEY L BERGER · 1985 to 2026
$222.3M
Translational Engineering in Cancer (TEC)P30CA023108 · NCI · DARTMOUTH COLLEGE · PI Steven D Leach · 1985 to 2026
$91.3M
Statistical MethodsP01CA087969 · NCI · BRIGHAM AND WOMEN'S HOSPITAL · PI TWOROGER, SHELLEY S · 2000 to 2019
$77.8M
Family Studies ZIACP004410 · NCI · DIVISION OF CANCER EPIDEMIOLOGY AND GENETICS · PI SAVAGE, SHARON A. · 2009 to 2025
$56.1M
UT M.D. Anderson Cancer Center SPORE in MelanomaP50CA093459 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI GRIMM, ELIZABETH A · 2004 to 2014
$23.7M
Genetic Epidermiology of MelanomaR01CA083115 · NCI · UNIVERSITY OF PENNSYLVANIA · PI BISHOP, DAVID TIMOTHY, ELDER, DAVID ERIC · 2001 to 2017
$13.0M
BIOCHEMICAL MARKERS IN THE NURSES'HEALTH STUDY COHORTR01CA049449 · NCI · BRIGHAM AND WOMEN'S HOSPITAL · PI HANKINSON, SUSAN E · 1989 to 2008
$11.3M
Molecular and Genetic Analysis of Lung Cancer SurvivalR01CA092824 · NCI · HARVARD UNIVERSITY (SCH OF PUBLIC HLTH) · PI CHRISTIANI, DAVID C · 2002 to 2013
$5.9M
BIOCHEMICAL MARKERS IN THE NURSES HEALTH STUDY COHORTU01CA049449 · NCI · UNIVERSITY OF MASSACHUSETTS AMHERST · PI HANKINSON, SUSAN E · 1995 to 2013
$5.4M
Pathways from genotype and environment to melanomaR01CA088363 · NCI · QUEENSLAND INSTITUTE OF MEDICAL RESEARCH · PI HAYWARD, NICHOLAS K · 2001 to 2012
$2.4M
Genetic Predictors for DNA Repair Phenotype in CMMR01CA100264 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI WEI, QINGYI · 2004 to 2008
$1.5M
Cohort Study of Genetic Susceptibility to Cutaneous Malignant MelanomaR01CA122838 · NCI · BRIGHAM AND WOMEN'S HOSPITAL · PI HAN, JIALI · 2008 to 2010
$1.4M
Cancer Research UK 10589Cancer Research UK A10589Cancer Research UK A4994Cancer Research UK C37059/A11941Cancer Research UK C588/A10589Cancer Research UK C588/A4994Cancer Research UK C8216/A6129Intramural NIH HHSNCI NIH HHS 2P50CA093459NCI NIH HHS CA055075NCI NIH HHS CA100264NCI NIH HHS CA122838NCI NIH HHS CA133996NCI NIH HHS CA49449NCI NIH HHS CA83115NCI NIH HHS CA87969NCI NIH HHS CA88363NCI NIH HHS P30 CA016520NCI NIH HHS P30 CA023108NCI NIH HHS P30CA023108NCI NIH HHS P50 CA093459NCI NIH HHS R01 CA083115NCI NIH HHS R01 CA088363NCI NIH HHS R01 CA092824NCI NIH HHS R01 CA100264NCI NIH HHS R01 CA122838NCI NIH HHS R01 CA133996NCI NIH HHS R01 CA65558-02Wellcome Trust 076113Wellcome Trust WT084766/Z/08/Z
6 · The paper itself

Abstract

We report the results of an association study of melanoma that is based on the genome-wide imputation of the genotypes of 1,353 cases and 3,566 controls of European origin conducted by the GenoMEL consortium. This revealed an association between several SNPs in intron 8 of the FTO gene, including rs16953002, which replicated using 12,313 cases and 55,667 controls of European ancestry from Europe, the USA and Australia (combined P = 3.6 × 10(-12), per-allele odds ratio for allele A = 1.16). In addition to identifying a new melanoma-susceptibility locus, this is to our knowledge the first study to identify and replicate an association with SNPs in FTO not related to body mass index (BMI). These SNPs are not in intron 1 (the BMI-related region) and exhibit no association with BMI. This suggests FTO's function may be broader than the existing paradigm that FTO variants influence multiple traits only through their associations with BMI and obesity.

Indexed as

Body Mass IndexGenetic Predisposition to DiseaseAlpha-Ketoglutarate-Dependent Dioxygenase FTOCase-Control StudiesCooperative BehaviorFemaleGenetic LociGenome-Wide Association StudyGenotypeHumansMelanomaMeta-Analysis as TopicObesityPolymorphism, Single NucleotideProteinsRisk FactorsAlpha-Ketoglutarate-Dependent Dioxygenase FTOFTO protein, humanProteins

Identifiers

PMID23455637
PMCPMC3640814

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.