Evidence map›Paper›PMID 23454483›Full record

ArticleGene2013

Elk1 and AP-1 sites in the TBP promoter mediate alcohol-induced deregulation of Pol III-dependent genes.

Qian Zhong, Ganggang Shi, Yanmei Zhang, Daniel Levy, Shuping Zhong

Abstract read
In one paragraph

Article in Gene, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.2field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

  1. Alcohol Intake and Abnormal Expression of Brf1 in Breast Cancer.Oxidative medicine and cellular longevity · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Qian ZhongDepartment of Biochemistry and Molecular Biology, Keck School of Medicine, University of Southern California, Los Angeles, CA, USA.
Ganggang Shi
Yanmei Zhang
Daniel Levy
Shuping Zhong
Shantou University · CNUniversity of Southern California · US

Funding

Mechanism of Alcohol-induced RNA pol III dependent transcriptionR21AA017288 · NIAAA · UNIVERSITY OF SOUTHERN CALIFORNIA · PI ZHONG, SHUPING · 2009 to 2010
$447k
Function of Runx2 in alcohol-associated breast cancerR21AA023247 · NIAAA · UNIVERSITY OF SOUTHERN CALIFORNIA · PI ZHONG, SHUPING · 2014 to 2015
$446k
Role of MSK1, ERa and Brf1 in alcohol-associated breast cancerR21AA021114 · NIAAA · UNIVERSITY OF SOUTHERN CALIFORNIA · PI ZHONG, SHUPING · 2012 to 2013
$434k
NIAAA NIH HHS AA017288NIAAA NIH HHS AA021114NIAAA NIH HHS R21 AA017288NIAAA NIH HHS R21 AA021114NIAAA NIH HHS R21 AA023247
6 · The paper itself

Abstract

The major risk factors for hepatocellular carcinoma (HCC) are chronic liver diseases that include hepatitis B, hepatitis C, alcoholic liver disease and non-alcoholic steatohepatitis. However, the mechanisms of alcohol-associated HCC remain to be elucidated. The products of RNA Pol III (RNA polymerase III) dependent genes are elevated in both transformation cells and tumor cells. TBP (TATA-box binding protein) is a central transcription factor, which regulates Pol I, Pol II and Pol III gene activity. Our studies have demonstrated that alcohol increases TBP expression and Pol III gene transcription to promote liver tumor formation. We continue to investigate how ethanol mediates TBP expression. Here, we report that ethanol induces TBP promoter activity and the induction is ethanol dose dependent. Blocking the JNK1 pathway by a chemical inhibitor and siRNA reduces this ethanol-induced activity. Furthermore, mutating G>A at a -46 bp Elk1 binding site of the TBP promoter or mutating AP-1 binding site at -37 bp (A>G) and -38 bp (C>T) reduces the TBP promoter activity. Mutation of both Elk1 and AP-1 binding sites dramatically represses this induction. Together, these studies demonstrate that, for the first time, alcohol increases Pol III gene transcription through a response element, which is composed of the overlapping Elk1 and AP-1 binding sites of the TBP promoter and affected by alcohol. It suggests that these binding sites may play a critical role in alcohol-induced deregulation of Pol III genes in liver tumor development.

Indexed as

Alcohol DehydrogenaseAnimalsBase SequenceBinding SitesCarcinoma, HepatocellularDNA, NeoplasmEthanolets-Domain Protein Elk-1FemaleGene ExpressionHep G2 CellsHumansLiver NeoplasmsMaleMAP Kinase Signaling SystemMiceAlcohol DehydrogenaseDNA, NeoplasmELK1 protein, humanEthanolets-Domain Protein Elk-1RNA Polymerase IIITATA-Box Binding ProteinTranscription Factor AP-1activator protein 1ADHAlcoholalcohol dehydrogenasesAP-1c-Jun N-terminal kinasesElk-1Elk1ETS domain-containing proteinHCChepatocellular carcinomaJNKsLiver tumorLucluciferasenon-structure protein 5ANS5APol IIIPol III genespolymerase IIITBP

Identifiers

PMID23454483
PMCPMC3715583
OpenAlexW2147539685

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.