Evidence map›Paper›PMID 23454357›Full record

ArticleJournal of molecular biology2013

Structural and functional studies of γ-carboxyglutamic acid domains of factor VIIa and activated Protein C: role of magnesium at physiological calcium.

Kanagasabai Vadivel, Sayeh Agah, Amanda S Messer, Duilio Cascio, Madhu S Bajaj, Sriram Krishnaswamy, Charles T Esmon, Kaillathe Padmanabhan, S Paul Bajaj

Open access · greenAbstract read
In one paragraph

Article in Journal of molecular biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Antioxidant/anti-inflammatory effect of MgReviews in medical virology · 2022
    Review
  5. Structure of human factor VIIa-soluble tissue factor with calcium, magnesium and rubidium.Acta crystallographica. Section D, Structural biology · 2021
    Article
  6. Article
  7. Coagulatory Defects in Type-1 and Type-2 Diabetes.International journal of molecular sciences · 2019
    Review
  8. Review
  9. Article
  10. Lipid specificity of the membrane binding domain of coagulation factor X.Journal of thrombosis and haemostasis : JTH · 2017
    Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 1 country.

Kanagasabai VadivelUCLA/Orthopaedic Hospital Department of Orthopaedic Surgery, University of California, Los Angeles, CA 90095, USA.
Sayeh AgahUCLA/Orthopaedic Hospital Department of Orthopaedic Surgery, University of California, Los Angeles, CA 90095, USA.
Amanda S MesserUCLA/Orthopaedic Hospital Department of Orthopaedic Surgery, University of California, Los Angeles, CA 90095, USA.
Duilio CascioUCLA-DOE Institute for Genomics and Proteomics, Los Angeles, CA 90095, USA.
Madhu S BajajDivision of Pulmonology and Critical Care, Department of Medicine, University of California, Los Angeles, CA 90095, USA.
Sriram KrishnaswamyDepartment of Hematology, The Children's Hospital of Philadelphia, Philadelphia, PA 19104, USA.
Charles T EsmonOklahoma Medical Research Foundation, Howard Hughes Medical Institute, Oklahoma City, OK 73104, USA.
Kaillathe PadmanabhanDepartment of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI 48824, USA.
S Paul BajajUCLA/Orthopaedic Hospital Department of Orthopaedic Surgery, University of California, Los Angeles, CA 90095, USA; Molecular Biology Institute, University of California, Los Angeles, CA 90095, USA. Electronic address: pbajaj@mednet.ucla.edu.
University of California, Los Angeles · USOrthopaedic Hospital · USChildren's Hospital of Philadelphia · USHoward Hughes Medical Institute · USMichigan State University · US

Funding

Structural Correlates of Protease and Cofactor FunctionP01HL074124 · NHLBI · CHILDREN'S HOSP OF PHILADELPHIA · PI KRISHNASWAMY, SRIRAM · 2003 to 2013
$17.6M
BIOCHEMISTRY OF VARIANTS OF FACTOR IXR01HL036365 · NHLBI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI BAJAJ, S PAUL · 1986 to 2011
$3.7M
Proteinase Allostery and the Regulation of Blood CoagulationR01HL108933 · NHLBI · CHILDREN'S HOSP OF PHILADELPHIA · PI KRISHNASWAMY, SRIRAM · 2011 to 2014
$1.6M
HTC Imaging Plate Detector and Crystal Cryo-Cooling SystemS10RR026571 · NCRR · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI YEATES, TODD O · 2010 to 2010
$455k
Efficacy of Kunitz Domain 1 variants of TFPI-2 as novel antifibrinolytic agentsR21HL089661 · NHLBI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI BAJAJ, MADHU SATYA · 2009 to 2010
$424k
Biochemistry of Normal and Abnormal Variants of Factor IXR56HL036365 · NHLBI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI BAJAJ, S PAUL · 2007 to 2007
$356k
NCRR NIH HHS 1S10RR26571NHLBI NIH HHS P01 HL074124NHLBI NIH HHS R01 HL036365NHLBI NIH HHS R01 HL108933NHLBI NIH HHS R01HL36365NHLBI NIH HHS R21 HL089661NHLBI NIH HHS R21HL89661NHLBI NIH HHS R56 HL036365
6 · The paper itself

Abstract

Crystal structures of factor (F) VIIa/soluble tissue factor (TF), obtained under high Mg(2+) (50mM Mg(2+)/5mM Ca(2+)), have three of seven Ca(2+) sites in the γ-carboxyglutamic acid (Gla) domain replaced by Mg(2+) at positions 1, 4, and 7. We now report structures under low Mg(2+) (2.5mM Mg(2+)/5mM Ca(2+)) as well as under high Ca(2+) (5mM Mg(2+)/45 mM Ca(2+)). Under low Mg(2+), four Ca(2+) and three Mg(2+) occupy the same positions as in high-Mg(2+) structures. Conversely, under low Mg(2+), reexamination of the structure of Gla domain of activated Protein C (APC) complexed with soluble endothelial Protein C receptor (sEPCR) has position 4 occupied by Ca(2+) and positions 1 and 7 by Mg(2+). Nonetheless, in direct binding experiments, Mg(2+) replaced three Ca(2+) sites in the unliganded Protein C or APC. Further, the high-Ca(2+) condition was necessary to replace Mg4 in the FVIIa/soluble TF structure. In biological studies, Mg(2+) enhanced phospholipid binding to FVIIa and APC at physiological Ca(2+). Additionally, Mg(2+) potentiated phospholipid-dependent activations of FIX and FX by FVIIa/TF and inactivation of activated factor V by APC. Since APC and FVIIa bind to sEPCR involving similar interactions, we conclude that under the low-Mg(2+) condition, sEPCR binding to APC-Gla (or FVIIa-Gla) replaces Mg4 by Ca4 with an attendant conformational change in the Gla domain ω-loop. Moreover, since phospholipid and sEPCR bind to FVIIa or APC via the ω-loop, we predict that phospholipid binding also induces the functional Ca4 conformation in this loop. Cumulatively, the data illustrate that Mg(2+) and Ca(2+) act in concert to promote coagulation and anticoagulation.

Indexed as

1-Carboxyglutamic AcidBinding SitesCalciumCrystallography, X-RayFactor VIIaHumansMagnesiumModels, MolecularPhospholipidsProtein BindingProtein CProtein Conformation1-Carboxyglutamic AcidCalciumFactor VIIaMagnesiumPhospholipidsProtein C

Identifiers

PMID23454357
PMCPMC4017951
OpenAlexW2137221818

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.