Evidence map›Paper›PMID 23454349›Full record

ArticleChemistry and physics of lipids2013

Ligand-dependent cholesterol interactions with the human A(2A) adenosine receptor.

Ji Young Lee, Rohan Patel, Edward Lyman

Open access · greenAbstract read
In one paragraph

Article in Chemistry and physics of lipids, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Cholesterol Dependent Activity of the Adenosine AMolecules (Basel, Switzerland) · 2022
    Article
  5. Article
  6. Article
  7. Review
  8. Review
  9. Article
  10. Review
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Ji Young LeeDepartment of Physics and Astrophysics, University of Delaware, Newark, DE, USA.
Rohan Patel
Edward Lyman
University of Delaware · US

Funding

COBRE on Membrane Protein Production and CharacterizationP30GM103519 · NIGMS · UNIVERSITY OF DELAWARE · PI LENHOFF, ABRAHAM M · 2012 to 2014
$3.3M
THE ROLE OF MITOCHONDRIAL TRANSPORT PROTEINS IN HEPATOCYTES AND ADIPOCYTESP30RR031160 · NCRR · UNIVERSITY OF DELAWARE · PI WOULFE, DONNA S · 2010 to 2011
$2.6M
Howard Hughes Medical InstituteNCRR NIH HHS 5P30RR031160-03NIGMS NIH HHS 8 P30GM103519-03NIGMS NIH HHS P30 GM103519
6 · The paper itself

Abstract

We present nearly 10 μs of all-atom simulation data of a G-protein coupled receptor, the human A2A adenosine receptor, bound to four different ligands. Our focus is on binding of cholesterol to the "cholesterol consensus motif," a cluster of five amino acids on the second and fourth transmembrane helices, which interact with two cholesterols in the intracellular leaflet of the bilayer. We find evidence for a ligand-specific interaction between the CCM and cholesterol, mediated by the rotameric dynamics and configuration of Trp129. Binding of the synthetic agonist UK432097 disrupts hydrogen bonding between Trp129 and Ser47, which activates the rotameric dynamics of Trp129 and disrupts the interaction with one of the two cholesterols. We also investigate the effect of four thermostabilizing mutations, three of which are located on helix two. The conformational stability of helix two has been proposed to be sensitive to interaction with cholesterol in the CCM, suggesting a mechanism for the thermostabilization. However, our data are instead suggestive of a force-field dependent "straightening" of helix two, and therefore offer no basis for rationalizing the effect of the quadruple mutant.

Indexed as

Models, MolecularAmino Acid MotifsCell MembraneCholesterolHumansLigandsProtein BindingProtein StabilityReceptor, Adenosine A2ACholesterolLigandsReceptor, Adenosine A2A

Identifiers

PMID23454349
PMCPMC3652319
OpenAlexW1979200280

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.