Evidence map›Paper›PMID 23453808›Full record

ArticleMolecular cell2013

The n-SET domain of Set1 regulates H2B ubiquitylation-dependent H3K4 methylation.

Jaehoon Kim, Jung-Ae Kim, Robert K McGinty, Uyen T T Nguyen, Tom W Muir, C David Allis, Robert G Roeder

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 93 papers.

0numbers the graph read from it
0cells of the map it votes in
93citing papers in PubMed
5.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

93 citing papers in PubMed, 142 citations in OpenAlex.

  1. Review
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  12. Histone H2B ubiquitylation: Connections to transcription and effects on chromatin structure.Biochimica et biophysica acta. Gene regulatory mechanisms · 2024
    Review
  13. Article
  14. Review
  15. Review
  16. Decoding Ubiquitin Modifications by Mass Spectrometry.Advances in experimental medicine and biology · 2024
    Review
  17. Article
  18. Article
  19. Review
  20. Article

33 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 1 institution in 2 countries.

Jaehoon KimLaboratory of Biochemistry and Molecular Biology, The Rockefeller University, New York, NY 10065, USA.
Jung-Ae Kim
Robert K McGinty
Uyen T T Nguyen
Tom W Muir
C David Allis
Robert G Roeder
Rockefeller University · US

Funding

Weill Cornell/Rockefeller/Sloan-Kettering MST ProgramT32GM007739 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI HSU, KATHARINE C · 1985 to 2023
$51.1M
INFLUENCE OF HISTONE H1 AND HMGS ON GENE EXPRESSIONR01GM040922 · NIGMS · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI ALLIS, CHARLES DAVID · 1989 to 2022
$10.0M
Nuclear Receptor Coactivator Functions and MechanismsR01DK071900 · NIDDK · ROCKEFELLER UNIVERSITY · PI ROEDER, ROBERT G · 2005 to 2015
$5.9M
Mechanisms of p53 target gene activation in DNA damage responsesR01CA129325 · NCI · ROCKEFELLER UNIVERSITY · PI ROEDER, ROBERT G · 2007 to 2011
$4.0M
Cancer Epigenetics Deregulation of Chromatin templated ProcessesRC2CA148354 · NCI · ROCKEFELLER UNIVERSITY · PI ALLIS, CHARLES DAVID, MUIR, TOM · 2009 to 2010
$2.6M
Development and Applications of 'Designer Chromatin'R01GM107047 · NIGMS · PRINCETON UNIVERSITY · PI MUIR, TOM · 2013 to 2016
$1.2M
NCI NIH HHS CA129325NCI NIH HHS CA148354NCI NIH HHS R01 CA129325NCI NIH HHS RC2 CA148354NIDDK NIH HHS DK071900NIDDK NIH HHS R01 DK071900NIGMS NIH HHS GM40922NIGMS NIH HHS R01 GM040922NIGMS NIH HHS R01 GM107047NIGMS NIH HHS T32 GM007739
6 · The paper itself

Abstract

Past studies have documented a crosstalk between H2B ubiquitylation (H2Bub) and H3K4 methylation, but little (if any) direct evidence exists explaining the mechanism underlying H2Bub-dependent H3K4 methylation on chromatin templates. Here, we took advantage of an in vitro histone methyltransferase assay employing a reconstituted yeast Set1 complex (ySet1C) and a recombinant chromatin template containing fully ubiquitylated H2B to gain valuable insights. Combined with genetic analyses, we demonstrate that the n-SET domain within Set1, but not Swd2, is essential for H2Bub-dependent H3K4 methylation. Spp1, a homolog of human CFP1, is conditionally involved in this crosstalk. Our findings extend to the human Set1 complex, underscoring the conserved nature of this disease-relevant crosstalk pathway. As not all members of the H3K4 methyltransferase family contain n-SET domains, our studies draw attention to the n-SET domain as a predictor of an H2B ubiquitylation-sensing mechanism that leads to downstream H3K4 methylation.

Indexed as

UbiquitinationAmino Acid MotifsAmino Acid SequenceAnimalsCatalytic DomainChromatinDNA-Binding ProteinsHeLa CellsHistone-Lysine N-MethyltransferaseHistonesHumansMethylationMolecular Sequence DataMultiprotein ComplexesProtein BindingProtein Interaction Domains and MotifsChromatinDNA-Binding ProteinsHistone-Lysine N-MethyltransferaseHistonesMultiprotein ComplexesProtein SubunitsSaccharomyces cerevisiae ProteinsSET1 protein, S cerevisiaeSPP1 protein, S cerevisiaeXenopus Proteins

Identifiers

PMID23453808
PMCPMC3615140
OpenAlexW1991487490

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.