Evidence map›Paper›PMID 23451136›Full record

ArticlePloS one2013

Structure of the arginine methyltransferase PRMT5-MEP50 reveals a mechanism for substrate specificity.

Meng-Chiao Ho, Carola Wilczek, Jeffrey B Bonanno, Li Xing, Janina Seznec, Tsutomu Matsui, Lester G Carter, Takashi Onikubo, P Rajesh Kumar, Man K Chan and 5 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 93 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
93citing papers in PubMed, 1 pooled it
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

93 citing papers in PubMed, 1 synthesis or guideline pooled it, 131 citations in OpenAlex.

  1. Pooled it
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  6. LC-MS profiling ofbioRxiv : the preprint server for biology · 2026
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33 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

15 authors at 5 institutions in 2 countries.

Meng-Chiao HoDepartment of Biochemistry, Albert Einstein College of Medicine of Yeshiva University, Bronx, New York, United States of America. joeho@gate.sinica.edu.tw
Carola Wilczek
Jeffrey B Bonanno
Li Xing
Janina Seznec
Tsutomu Matsui
Lester G Carter
Takashi Onikubo
P Rajesh Kumar
Man K Chan
Michael Brenowitz
R Holland Cheng
Ulf Reimer
Steven C Almo
David Shechter
Yeshiva University · USAlbert Einstein College of Medicine · USStanford Synchrotron Radiation Lightsource · USUniversity of California, Davis · USInstitute of Biological Chemistry, Academia Sinica · TW

Funding

WORD PROCESSORP30CA013330 · NCI · YESHIVA UNIVERSITY · PI THOMAS E ROHAN · 1985 to 2026
$111.2M
ZWITTERION SURFACTANT DDMAB FOR IMPROV STABIL OF PROTEINP41RR001209 · NCRR · STANFORD UNIVERSITY · PI GONZALEZ, ANA M · 1985 to 2011
$38.9M
Core H: MicrobiologyU54GM093342 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI GERLT, JOHN A · 2010 to 2015
$34.6M
The NYSGRC: A Large Scale Center for PSI:BiologyU54GM094662 · NIGMS · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI ALMO, STEVEN C. · 2010 to 2014
$32.6M
X-RAY STRUCTURE OF RIFM PROTEIN FROM THE BIOSYNTHESIS PATHWAY OF THE ANSAMYCIN AP41RR012408 · NCRR · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI ORVILLE, ALLEN M · 1998 to 2011
$32.2M
Case Center for Synchrotron BiosciencesP30EB009998 · NIBIB · CASE WESTERN RESERVE UNIVERSITY · PI CHANCE, MARK R · 2009 to 2018
$8.4M
Macromolecular Crystallography at the National Synchrotron Light SourceP41GM103473 · NIGMS · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI SWEET, ROBERT M · 2012 to 2013
$4.9M
Present Homologous and Heterologous Antigen with Hepatitis E VirusR56AI095382 · NIAID · UNIVERSITY OF CALIFORNIA AT DAVIS · PI CHENG, R.HOLLAND · 2012 to 2012
$385k
NCI NIH HHS CA013330NCI NIH HHS P30 CA013330NCRR NIH HHS P41 RR001209NCRR NIH HHS P41RR001209NCRR NIH HHS P41 RR012408NCRR NIH HHS P41RR012408NIAID NIH HHS AI095382NIAID NIH HHS R56 AI095382NIBIB NIH HHS P30 EB009998NIGMS NIH HHS GM093342NIGMS NIH HHS P41 GM103473NIGMS NIH HHS P41GM103473NIGMS NIH HHS U54 GM093342NIGMS NIH HHS U54GM094662
6 · The paper itself

Abstract

The arginine methyltransferase PRMT5-MEP50 is required for embryogenesis and is misregulated in many cancers. PRMT5 targets a wide variety of substrates, including histone proteins involved in specifying an epigenetic code. However, the mechanism by which PRMT5 utilizes MEP50 to discriminate substrates and to specifically methylate target arginines is unclear. To test a model in which MEP50 is critical for substrate recognition and orientation, we determined the crystal structure of Xenopus laevis PRMT5-MEP50 complexed with S-adenosylhomocysteine (SAH). PRMT5-MEP50 forms an unusual tetramer of heterodimers with substantial surface negative charge. MEP50 is required for PRMT5-catalyzed histone H2A and H4 methyltransferase activity and binds substrates independently. The PRMT5 catalytic site is oriented towards the cross-dimer paired MEP50. Histone peptide arrays and solution assays demonstrate that PRMT5-MEP50 activity is inhibited by substrate phosphorylation and enhanced by substrate acetylation. Electron microscopy and reconstruction showed substrate centered on MEP50. These data support a mechanism in which MEP50 binds substrate and stimulates PRMT5 activity modulated by substrate post-translational modifications.

Indexed as

AnimalsCatalytic DomainChromosomal Proteins, Non-HistoneDimerizationModels, MolecularProtein-Arginine N-MethyltransferasesProtein ConformationSubstrate SpecificityXenopus laevisXenopus ProteinsChromosomal Proteins, Non-Histonemethylosome protein 50, XenopusPrmt5 protein, XenopusProtein-Arginine N-MethyltransferasesXenopus Proteins

Identifiers

PMID23451136
PMCPMC3581573
OpenAlexW2072731237

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.