Evidence map›Paper›PMID 23451105›Full record

ArticlePloS one2013

A possible role for the asymmetric C-terminal domain dimer of Rous sarcoma virus integrase in viral DNA binding.

Ke Shi, Krishan K Pandey, Sibes Bera, Ajaykumar C Vora, Duane P Grandgenett, Hideki Aihara

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Retroviral Integrase: Then and Now.Annual review of virology · 2015
    Review
  11. C-Terminal Domain of Integrase Binds between the Two Active Sites.Journal of chemical theory and computation · 2015
    Article
  12. Multifunctional facets of retrovirus integrase.World journal of biological chemistry · 2015
    Review
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Ke ShiDepartment of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, Minneapolis, Minnesota, United States of America.
Krishan K Pandey
Sibes Bera
Ajaykumar C Vora
Duane P Grandgenett
Hideki Aihara
Saint Louis University · USUniversity of Minnesota · US

Funding

Crystallographic Studies of Retroviral IntegrasesR33AI087098 · NIAID · UNIVERSITY OF MINNESOTA · PI AIHARA, HIDEKI · 2011 to 2013
$1.1M
HIV integrase/DNA complexes and concerted integrationR21AI081629 · NIAID · SAINT LOUIS UNIVERSITY · PI GRANDGENETT, DUANE P · 2009 to 2010
$430k
Crystallographic Studies of Retroviral IntegrasesR21AI087098 · NIAID · UNIVERSITY OF MINNESOTA · PI AIHARA, HIDEKI · 2009 to 2010
$405k
HIV Integrase Structural BiologyR21AI100682 · NIAID · SAINT LOUIS UNIVERSITY · PI GRANDGENETT, DUANE P · 2012 to 2013
$401k
NIAID NIH HHS AI081629NIAID NIH HHS AI087098NIAID NIH HHS R21 AI081629NIAID NIH HHS R21 AI087098NIAID NIH HHS R21 AI100682NIAID NIH HHS R33 AI087098
6 · The paper itself

Abstract

Integration of the retrovirus linear DNA genome into the host chromosome is an essential step in the viral replication cycle, and is catalyzed by the viral integrase (IN). Evidence suggests that IN functions as a dimer that cleaves a dinucleotide from the 3' DNA blunt ends while a dimer of dimers (tetramer) promotes concerted integration of the two processed ends into opposite strands of a target DNA. However, it remains unclear why a dimer rather than a monomer of IN is required for the insertion of each recessed DNA end. To help address this question, we have analyzed crystal structures of the Rous sarcoma virus (RSV) IN mutants complete with all three structural domains as well as its two-domain fragment in a new crystal form at an improved resolution. Combined with earlier structural studies, our results suggest that the RSV IN dimer consists of highly flexible N-terminal domains and a rigid entity formed by the catalytic and C-terminal domains stabilized by the well-conserved catalytic domain dimerization interaction. Biochemical and mutational analyses confirm earlier observations that the catalytic and the C-terminal domains of an RSV IN dimer efficiently integrates one viral DNA end into target DNA. We also show that the asymmetric dimeric interaction between the two C-terminal domains is important for viral DNA binding and subsequent catalysis, including concerted integration. We propose that the asymmetric C-terminal domain dimer serves as a viral DNA binding surface for RSV IN.

Indexed as

DNA, ViralIntegrasesProtein BindingProtein Structure, TertiaryRous sarcoma virusViral ProteinsDNA, ViralIntegrasesViral Proteins

Identifiers

PMID23451105
PMCPMC3579926
OpenAlexW2062192208

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.