Evidence map›Paper›PMID 23450459›Full record

ArticleG3 (Bethesda, Md.)2013

Fine-mapping and identification of a candidate gene underlying the d2 dwarfing phenotype in pearl millet, Cenchrus americanus (L.) Morrone.

Rajiv K Parvathaneni, Vinod Jakkula, Francis K Padi, Sebastien Faure, Nethra Nagarajappa, Ana C Pontaroli, Xiaomei Wu, Jeffrey L Bennetzen, Katrien M Devos

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 25 citations in OpenAlex.

  1. Mapping QTLs forFrontiers in plant science · 2025
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  5. Structural Characterization ofG3 (Bethesda, Md.) · 2019
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  6. Parallelism and convergence in post-domestication adaptation in cereal grasses.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2019
    Review
  7. Article
  8. Article
  9. Frontiers in plant science · 2016
    Review
  10. Article
  11. Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 3 countries.

Rajiv K ParvathaneniInstitute of Plant Breeding, Genetics and Genomics, University of Georgia, Athens, Georgia 30602, USA.
Vinod Jakkula
Francis K Padi
Sebastien Faure
Nethra Nagarajappa
Ana C Pontaroli
Xiaomei Wu
Jeffrey L Bennetzen
Katrien M Devos
University of Georgia · USBiogemma (France) · FRCocoa Research Institute of Ghana · GH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pearl millet is one of the most important subsistence crops grown in India and sub-Saharan Africa. In many cereal crops, reduced height is a key trait for enhancing yield, and dwarf mutants have been extensively used in breeding to reduce yield loss due to lodging under intense management. In pearl millet, the recessive d2 dwarfing gene has been deployed widely in commercial germplasm grown in India, the United States, and Australia. Despite its importance, very little research has gone into determining the identity of the d2 gene. We used comparative information, genetic mapping in two F2 populations representing a total of some 1500 progeny, and haplotype analysis of three tall and three dwarf inbred lines to delineate the d2 region by two genetic markers that, in sorghum, define a region of 410 kb with 40 annotated genes. One of the sorghum genes annotated within this region is ABCB1, which encodes a P-glycoprotein involved in auxin transport. This gene had previously been shown to underlie the economically important dw3 dwarf mutation in sorghum. The cosegregation of ABCB1 with the d2 phenotype, its differential expression in the tall inbred ICMP 451 and the dwarf inbred Tift 23DB, and the similar phenotype of stacked lower internodes in the sorghum dw3 and pearl millet d2 mutants suggest that ABCB1 is a likely candidate for d2.

Indexed as

Gene Expression Regulation, PlantGenes, PlantPhenotypeATP Binding Cassette Transporter, Subfamily B, Member 1Biological TransportChromosome MappingChromosomes, Artificial, BacterialCrosses, GeneticGenes, RecessiveGenetic LociGenetic MarkersHaplotypesIndoleacetic AcidsMolecular Sequence AnnotationMolecular Sequence DataMutationATP Binding Cassette Transporter, Subfamily B, Member 1Genetic MarkersIndoleacetic AcidsPlant Proteinscomparative genomicsfine-mappinghaplotype analysisP-glycoprotein

Identifiers

PMID23450459
PMCPMC3583462
OpenAlexW2106705303

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.