Evidence map›Paper›PMID 23450183›Full record

ArticleStandards in genomic sciences2012

Genome sequence of the Antarctic rhodopsins-containing flavobacterium Gillisia limnaea type strain (R-8282(T)).

Thomas Riedel, Brittany Held, Matt Nolan, Susan Lucas, Alla Lapidus, Hope Tice, Tijana Glavina Del Rio, Jan-Fang Cheng, Cliff Han, Roxanne Tapia and 22 more

Open access · goldAbstract read
In one paragraph

Article in Standards in genomic sciences, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.6field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Review
  3. Genome-Based Taxonomic Classification ofFrontiers in microbiology · 2016
    Article
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

32 authors at 7 institutions in 3 countries.

Thomas RiedelHZI - Helmholtz Centre for Infection Research, Braunschweig, Germany.
Brittany Held
Matt Nolan
Susan Lucas
Alla Lapidus
Hope Tice
Tijana Glavina Del Rio
Jan-Fang Cheng
Cliff Han
Roxanne Tapia
Lynne A Goodwin
Sam Pitluck
Konstantinos Liolios
Konstantinos Mavromatis
Ioanna Pagani
Natalia Ivanova
Natalia Mikhailova
Amrita Pati
Amy Chen
Krishna Palaniappan
Miriam Land
Manfred Rohde
Brian J Tindall
John C Detter
Markus Göker
James Bristow
Jonathan A Eisen
Victor Markowitz
Philip Hugenholtz
Nikos C Kyrpides
Hans-Peter Klenk
Tanja Woyke
Joint Genome Institute · USLos Alamos National Laboratory · USHelmholtz Centre for Infection Research · DELawrence Berkeley National Laboratory · USLeibniz Institute DSMZ – German Collection of Microorganisms and Cell Cultures · DEOak Ridge National Laboratory · USThe University of Queensland · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Gillisia limnaea Van Trappen et al. 2004 is the type species of the genus Gillisia, which is a member of the well characterized family Flavobacteriaceae. The genome of G. limnea R-8282(T) is the first sequenced genome (permanent draft) from a type strain of the genus Gillisia. Here we describe the features of this organism, together with the permanent-draft genome sequence and annotation. The 3,966,857 bp long chromosome (two scaffolds) with its 3,569 protein-coding and 51 RNA genes is a part of the GenomicEncyclopedia of Bacteria and Archaea project.

Indexed as

aerobicchemoheterotrophicFlavobacteriaceaeGEBAmicrobial matmoderately halotolerantmotileproteorhodopsinpsychrophilicrod-shapedyellow-pigmented

Identifiers

PMID23450183
PMCPMC3570806
OpenAlexW2073319491

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.