Evidence map›Paper›PMID 23449845›Full record

ArticleStandards in genomic sciences2012

Complete genome sequence of Thermovibrio ammonificans HB-1(T), a thermophilic, chemolithoautotrophic bacterium isolated from a deep-sea hydrothermal vent.

Donato Giovannelli, Jessica Ricci, Ileana Pérez-Rodríguez, Michael Hügler, Charles O'Brien, Ramaydalis Keddis, Ashley Grosche, Lynne Goodwin, David Bruce, Karen W Davenport and 11 more

Open access · goldAbstract read
In one paragraph

Article in Standards in genomic sciences, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 5 institutions in 3 countries.

Donato GiovannelliDepartment of Biochemistry and Microbiology, Rutgers University, New Brunswick, NJ, USA ; Institute of Marine and Coastal Sciences, Rutgers University, New Brunswick, NJ, USA ; Institute for Marine Science - ISMAR, National Research Council of Italy - CNR, Ancona, Italy.
Jessica Ricci
Ileana Pérez-Rodríguez
Michael Hügler
Charles O'Brien
Ramaydalis Keddis
Ashley Grosche
Lynne Goodwin
David Bruce
Karen W Davenport
Chris Detter
James Han
Shunsheng Han
Natalia Ivanova
Miriam L Land
Natalia Mikhailova
Matt Nolan
Sam Pitluck
Roxanne Tapia
Tanja Woyke
Costantino Vetriani
Joint Genome Institute · USRutgers, The State University of New Jersey · USLos Alamos National Laboratory · USDVGW - Technologiezentrum Wasser · DEOak Ridge National Laboratory · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Thermovibrio ammonificans type strain HB-1(T) is a thermophilic (Topt: 75°C), strictly anaerobic, chemolithoautotrophic bacterium that was isolated from an active, high temperature deep-sea hydrothermal vent on the East Pacific Rise. This organism grows on mineral salts medium in the presence of CO2/H2, using NO3(-) or S(0) as electron acceptors, which are reduced to ammonium or hydrogen sulfide, respectively. T. ammonificans is one of only three species within the genus Thermovibrio, a member of the family Desulfurobacteriaceae, and it forms a deep branch within the phylum Aquificae. Here we report the main features of the genome of T. ammonificans strain HB-1(T) (DSM 15698(T)).

Indexed as

anaerobicAquificaechemolithoautotrophicDesulfurobacteriaceaehydrothermal ventthermophilic

Identifiers

PMID23449845
PMCPMC3570795
OpenAlexW2075823087

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.