Evidence map›Paper›PMID 23446419›Full record

ArticleNature2013

Dynamics extracted from fixed cells reveal feedback linking cell growth to cell cycle.

Ran Kafri, Jason Levy, Miriam B Ginzberg, Seungeun Oh, Galit Lahav, Marc W Kirschner

Abstract read
In one paragraph

Article in Nature, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 132 papers.

0numbers the graph read from it
0cells of the map it votes in
132citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

132 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. The Hox Gene,Molecular biology of the cell · 2025
    Article
  10. Article
  11. Article
  12. The Hox Gene,bioRxiv : the preprint server for biology · 2025
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Coupling of cell growth modulation to asymmetric division and cell cycle regulation inProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  18. Review
  19. Article
  20. Article

72 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Ran KafriDepartment of Systems Biology, Harvard Medical School, Boston, Massachusetts 02115, USA.
Jason Levy
Miriam B Ginzberg
Seungeun Oh
Galit Lahav
Marc W Kirschner

Funding

BIOCHEMICAL STUDIES OF MITOSISR01GM026875 · NIGMS · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI KIRSCHNER, MARC WALLACE · 1985 to 2019
$18.2M
Dynamics of Signaling Pathways: Mechanism and FunctionR01GM083303 · NIGMS · HARVARD MEDICAL SCHOOL · PI LAHAV, GALIT · 2008 to 2020
$5.2M
BIOCHEMICAL STUDIES OF MITOSISR37GM026875 · NIGMS · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI KIRSCHNER, MARC W · 1986 to 1995
–
NIGMS NIH HHS GM26875NIGMS NIH HHS R01 GM026875NIGMS NIH HHS R01 GM083303
6 · The paper itself

Abstract

Biologists have long been concerned about what constrains variation in cell size, but progress in this field has been slow and stymied by experimental limitations. Here we describe a new method, ergodic rate analysis (ERA), that uses single-cell measurements of fixed steady-state populations to accurately infer the rates of molecular events, including rates of cell growth. ERA exploits the fact that the number of cells in a particular state is related to the average transit time through that state. With this method, it is possible to calculate full time trajectories of any feature that can be labelled in fixed cells, for example levels of phosphoproteins or total cellular mass. Using ERA we find evidence for a size-discriminatory process at the G1/S transition that acts to decrease cell-to-cell size variation.

Indexed as

Cell SizeFeedback, PhysiologicalCell CountCell CycleCell LineCell ProliferationCycloheximideDimethyl SulfoxideG1 PhaseHeLa CellsHumansLeupeptinsPhosphoproteinsSingle-Cell AnalysisSirolimusS Phasebenzyloxycarbonylleucyl-leucyl-leucine aldehydeCycloheximideDimethyl SulfoxideLeupeptinsPhosphoproteinsSirolimus

Identifiers

PMID23446419
PMCPMC3730528

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.