Evidence map›Paper›PMID 23446344›Full record

ArticleNature2013

Structural visualization of key steps in human transcription initiation.

Yuan He, Jie Fang, Dylan J Taatjes, Eva Nogales

Open access · greenAbstract read
In one paragraph

Article in Nature, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 165 papers.

0numbers the graph read from it
0cells of the map it votes in
165citing papers in PubMed
18.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

165 citing papers in PubMed, 275 citations in OpenAlex.

  1. The molecular basis of transcription initiation by RNA polymerase II.Nature reviews. Molecular cell biology · 2026
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105 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 4 institutions in 1 country.

Yuan HeLife Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA.
Jie Fang
Dylan J Taatjes
Eva Nogales
Howard Hughes Medical Institute · USLawrence Berkeley National Laboratory · USUniversity of California, Berkeley · USUniversity of Colorado Boulder · US

Funding

Structure and Function of Transcription ComplexesP01CA112181 · NCI · UNIVERSITY OF CALIFORNIA BERKELEY · PI NOGALES, EVA · 2005 to 2009
$5.7M
Structural Studies of the Eukaryotic Transcription Initiation MachineryR01GM063072 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI NOGALES, EVA · 2001 to 2016
$2.5M
Structure and Mechanism of Eukaryotic Transcription RegulationR01GM144559 · NIGMS · NORTHWESTERN UNIVERSITY · PI HE, YUAN · 2022 to 2025
$1.4M
Mechanistic Studies of Mediator and the p53 Tumor SuppressorR01CA127364 · NCI · UNIVERSITY OF COLORADO · PI TAATJES, DYLAN J · 2007 to 2011
$1.1M
Howard Hughes Medical InstituteNCI NIH HHS CA127364NCI NIH HHS P01 CA112181NCI NIH HHS R01 CA127364NIGMS NIH HHS GM63072NIGMS NIH HHS R01 GM063072NIGMS NIH HHS R01 GM144559
6 · The paper itself

Abstract

Eukaryotic transcription initiation requires the assembly of general transcription factors into a pre-initiation complex that ensures the accurate loading of RNA polymerase II (Pol II) at the transcription start site. The molecular mechanism and function of this assembly have remained elusive due to lack of structural information. Here we have used an in vitro reconstituted system to study the stepwise assembly of human TBP, TFIIA, TFIIB, Pol II, TFIIF, TFIIE and TFIIH onto promoter DNA using cryo-electron microscopy. Our structural analyses provide pseudo-atomic models at various stages of transcription initiation that illuminate critical molecular interactions, including how TFIIF engages Pol II and promoter DNA to stabilize both the closed pre-initiation complex and the open-promoter complex, and to regulate start--initiation complexes, combined with the localization of the TFIIH helicases XPD and XPB, support a DNA translocation model of XPB and explain its essential role in promoter opening.

Indexed as

Base SequenceCryoelectron MicroscopyDNADNA HelicasesHumansModels, MolecularMolecular Sequence DataPromoter Regions, GeneticProtein ConformationRNA Polymerase IITATA-Box Binding ProteinTranscription Factors, TFIITranscription Factor TFIIHTranscription Initiation, GeneticTranscription Initiation SiteDNADNA HelicasesRNA Polymerase IITATA-Box Binding ProteinTranscription Factors, TFIItranscription factor TFIIEtranscription factor TFIIFTranscription Factor TFIIH

Identifiers

PMID23446344
PMCPMC3612373
OpenAlexW1984583080

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.