Evidence map›Paper›PMID 23444359›Full record

ArticleDevelopment (Cambridge, England)2013

PUF-8 and TCER-1 are essential for normal levels of multiple mRNAs in the C. elegans germline.

Kumari Pushpa, Ganga Anil Kumar, Kuppuswamy Subramaniam

Open access · hybridAbstract read
In one paragraph

Article in Development (Cambridge, England), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Kumari PushpaDepartment of Biological Sciences and Bioengineering, Indian Institute of Technology, Kanpur 208016, India.
Ganga Anil Kumar
Kuppuswamy Subramaniam
Indian Institute of Technology Kanpur · IN

Funding

Wellcome Trust
6 · The paper itself

Abstract

PUF family proteins are well-conserved regulators of cell proliferation in different developmental processes. They regulate target mRNAs by promoting degradation or by influencing translation through interaction with the translation initiation machinery. Here we show that Caenorhabditis elegans PUF-8 functions redundantly with the nuclear protein TCER-1 in the post-transcriptional maintenance of at least six germline mRNAs. The levels of spliced mRNAs in the puf-8(-) tcer-1(-) double mutant are only 10-30% of the wild type, whereas the unspliced forms increase by ∼2- to 3-fold compared with the wild type. These two proteins colocalise at the inner nuclear periphery, and their absence leads to reduced germ cell proliferation and to sterility. A yeast two-hybrid screen of 31 components of the nuclear pore complex and mRNA processing machineries identified seven proteins involved in mRNA export as potential partners of PUF-8. One of these, the nuclear cap-binding protein NCBP-2, colocalises with PUF-8 in the nucleus. A 50 amino acid N-terminal domain of PUF-8 is essential for interaction with NCBP-2 and for PUF-8 to function redundantly with TCER-1. These results reveal two important unexpected aspects of PUF proteins: that, in addition to the C-terminal PUF domain, the N-terminal domain is crucial for PUF function, and that PUF proteins have a novel role in mRNA maintenance. We propose that PUF proteins, in addition to their known cytoplasmic roles, participate in nuclear processing and/or export of mRNAs.

Indexed as

Caenorhabditis elegansAnimalsAnimals, Genetically ModifiedCaenorhabditis elegans ProteinsGene Expression Regulation, DevelopmentalGerm CellsPeptide Elongation FactorsProtein BindingRNA-Binding ProteinsRNA, MessengerRNA Processing, Post-TranscriptionalRNA TransportTissue DistributionTwo-Hybrid System TechniquesCaenorhabditis elegans ProteinsPeptide Elongation FactorsPUF-8 protein, C elegansRNA-Binding ProteinsRNA, MessengerTCER-1 protein, C elegans

Identifiers

PMID23444359
PMCPMC3585663
OpenAlexW2005434476

What OpenQuestion holds

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LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.